DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and sv2a

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_012825002.1 Gene:sv2a / 100379721 XenbaseID:XB-GENE-968429 Length:729 Species:Xenopus tropicalis


Alignment Length:586 Identity:111/586 - (18%)
Similarity:194/586 - (33%) Gaps:200/586 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 EWNL--VCGRDFMA-------------------ATSDS-------LFMLGVLLGSIVFGQLSDKY 155
            :|.|  |.|...||                   ..|||       :..||:::|:.::|.::|:.
 Frog   152 QWTLYFVLGLALMADGVEIFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGMADRI 216

  Fly   156 GRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGI 220
            ||:..|..||.:..:|...:.....|.|:.|.||:.|....|...:.:....|.:..:||.....
 Frog   217 GRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLS 281

  Fly   221 FVMMFFSVGFMLTAVF----------------AYFVHDWRWLQIALTLPGLIFMFYYWIIPESAR 269
            ::.||:.:|.:..:..                ||..|.||...:....|.:..:.....:|||.|
 Frog   282 WLCMFWMIGGIYASAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTMPESPR 346

  Fly   270 WLLLKGRKDCA--------IANMQKAAR----FNKVEI----SDEALSELLDEGENSEEKAKQKL 318
            :.|..|:.|.|        ..||:....    |:..:|    .|:.|.|:..:......:...||
 Frog   347 FFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTQIKTIKQDDELVEIQSDTGALHRRWMIKL 411

  Fly   319 ED--QELDEGPPPSVWDLF--CY-PNLRRKTLLIFLDWLVTSGVYYGLS-W------NTSNLG-- 369
            .:  ||        ||..|  |: |..||.||::...|...|..||||: |      :..|:.  
 Frog   412 LNLSQE--------VWANFHQCFAPEYRRITLMMMAVWFTMSFSYYGLTVWFPDMIKHLQNIDYA 468

  Fly   370 -----------GNVLLNFVISGAVE---------------------------------------- 383
                       .|...||.:...|.                                        
 Frog   469 SRTKYFHNESVNNFNFNFTLENQVHRKGEYHNDKFIGLKLKSVIFEDSLFTDCYFEDITSSNTFF 533

  Fly   384 --------------------------------------------------------------IPA 386
                                                                          :|.
 Frog   534 KNCSFIRTMFYNTDLFDYKFINSKFTNSTFLHSKEGCQLDFSDDINNAYMIYFVSFLGTLAVLPG 598

  Fly   387 YIFLLLTLNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTLIVACAMLGKLAITASYGTVYIFSA 451
            .|...|.:::.||..:|.|..||:.:|.. .:........:|....:.|.::| ||:..:.:.:.
 Frog   599 NIVSALLMDKIGRLRMLAGSSVMSCISCF-FLFFGNSESAMIALLCLFGGVSI-ASWNALDVLTV 661

  Fly   452 EQFPTVVRNVALGAASMVARISGMM--APFLNFLATIWKPLPLLICGSLTLVAGLLSLLLPETHN 514
            |.:|:..|..|.|..:.:.:::.::  :.|.:|:. :.|.:|:|:..:...|...|:|.||||..
 Frog   662 ELYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVG-VAKAVPILLASAALAVGSFLALKLPETRG 725

  Fly   515 K 515
            :
 Frog   726 Q 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 111/586 (19%)
MFS 127..503 CDD:119392 101/562 (18%)
sv2aXP_012825002.1 synapt_SV2 1..729 CDD:130366 111/586 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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