DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and myo19

DIOPT Version :10

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001122117.1 Gene:myo19 / 734140 XenbaseID:XB-GENE-999897 Length:969 Species:Xenopus tropicalis


Alignment Length:869 Identity:268/869 - (30%)
Similarity:432/869 - (49%) Gaps:129/869 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 HDDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGE- 122
            :||..::..:..||.|..|:.||.....||.....::||||:|.:.:||:.:.:|:|:..|..: 
 Frog    45 YDDLTKVNPVTTATVLKCLQARYSAGVFYTNAGCTVVAVNPFRPVCKLYSSEVMKEYHAASNPQG 109

  Fly   123 LPPHVFAIADKAIRDM--RVYKLSQSIIVSGESGAGKTESTKYLLKYL-------CY-SHDSAGP 177
            ..||:|.:|::|.:::  ::..::||||||||||||||.:::.|:|:.       || :::....
 Frog   110 CKPHIFTVAEQAYKNVQSQIQPVNQSIIVSGESGAGKTWTSRCLMKFYATVSASRCYITNEMVER 174

  Fly   178 IETKILDANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEE 242
            ||:::||:|||:||||||.|.||:|||||||:|::..:...|:.|..|..|||||:|:..|:..|
 Frog   175 IESRVLDSNPVMEAFGNACTLRNHNSSRFGKYIQLQLNRTQQITGASIQTYLLEKTRVAHQAPLE 239

  Fly   243 RNYHVFYMLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKD 307
            ||:|:||.::.||.:..|::.:|.:..::.:|..    :.|...|                    
 Frog   240 RNFHIFYQVVKGASRHEREEWNLPEKANFSWLPN----YENNLEE-------------------- 280

  Fly   308 PIIDDYQHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSL 372
               ||   |.....|:..||:..|.:..|:.:::.:||||||.|.:..|:.: .|:....:::..
 Frog   281 ---DD---FEVTKDAMLHLGIDQTTQNNIFKILSGLLHLGNIQFSDSVDESQ-PCEPLNYTQEFA 338

  Fly   373 TITSGLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVG 437
            ::.:.||.:..:.|...|..|.:.:.    |..|...|.:..|....||.|||.||:|||:.:|.
 Frog   339 SVAASLLKIPVSHLLERLSIRTITAG----KQQVFKKPCRKSECDTRRDCLAKTIYARLFEWLVT 399

  Fly   438 LINQSIPFQAS--NFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREG 500
            :||::|..:|.  |.:||:||:.|||.|..|:.||.||||.|||||:.|..:.||::|:.|..||
 Frog   400 VINENICAEAYRWNNFIGLLDVYGFESFPENNLEQLCINYANEKLQQHFVSHYLKSQQDEYAAEG 464

  Fly   501 LNVPEITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPS-YSHFTAEVHKSWANHYRLGLPRSSR 564
            |....|::.|||..::|||.....||:||:||.:|.:.| .....:.:.|:.:::..:|..:.|:
 Frog   465 LEWSFISYQDNQSCVDLIEGSPISIFSLLNEECRLNRSSDAGQLQSRLEKALSHNKSIGRDKFSK 529

  Fly   565 LKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSV 629
                     :..|:|.|:||.|.|..|...|||.|.:...|..|:||.|:.|||.|||..::..|
 Frog   530 ---------KPNFIVSHYAGKVQYQIEDMAEKNKDPVPPELIQLLQESDDHLLQILFPVENNKPV 585

  Fly   630 RGKLNFISVG----SKFKTQLGELMEKLEQNGTNFIRCIKPN---SKMIDRQFEGSLALAQLKCS 687
            .|..|..:||    ||||..|..||:.|.....::|||||||   ..::.||.|   .|.||:..
 Frog   586 YGATNNRAVGVTVVSKFKGSLESLMQILHSTTPHYIRCIKPNVDCQALVFRQEE---VLMQLEAC 647

  Fly   688 GTISVLELMEHGYPSRVLFADLYSMYKSVLPPELV----------------------SLPAR--T 728
            |.:..:.:...|:|.|:.|......| ||:.|..:                      .||::  |
 Frog   648 GIVETINISAAGFPIRISFESFVERY-SVIAPRQIHMENNFNDCLFLKKKQGFEKTDQLPSKLQT 711

  Fly   729 FCEAMFQSL----NLSAKDFKFGITKVFFRPGKFVEFDRIMRSDPENMLAIVAKVKKWLIRSRWV 789
            ...|:...|    .||......|.||||. ....||.     .:...:.||.:|           
 Frog   712 ILHAVLSKLCKDSTLSNTLVHCGTTKVFL-THLMVEL-----LEERRLEAICSK----------- 759

  Fly   790 KSALGALCV----IKLRNR-IIYRNKCVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTI 849
                 |:|:    .:.|.| :..:|:.....|...:|:|.:|.....:.....|.:|.....:.:
 Frog   760 -----AVCIQCCWRRYRQRKLAKQNRAATTIQAAVKGWLTKKYIERMHNAATVIKRIWKKWKEKM 819

  Fly   850 EIASGLKMGREEIISGVNDIYRQI 873
            |     .:...|:...:.|:.|.:
 Frog   820 E-----ALAAAELDDSIEDVERTL 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..49 CDD:460670
MYSc_Myo6 71..754 CDD:276833 246/731 (34%)
CBD_MYO6-like 765..913 CDD:409646 18/114 (16%)
ERM_helical <954..1020 CDD:466641
MYO6_MIU_linker 1002..1093 CDD:480843
MyUb_Myo6 1076..1116 CDD:439319
Myosin-VI_CBD 1160..1246 CDD:465157
myo19NP_001122117.1 MYSc_Myo19 57..741 CDD:276846 246/732 (34%)
Adgb_C_mid-like <765..>824 CDD:412094 10/63 (16%)
IQCD 771..>796 CDD:467745 6/24 (25%)
IQ motif 783..802 CDD:412094 4/18 (22%)
globin helix A 804..819 CDD:412094 2/14 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.