DRSC/TRiP Functional Genomics Resources

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Protein Alignment jar and Myo28B1

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster


Alignment Length:1099 Identity:351/1099 - (31%)
Similarity:509/1099 - (46%) Gaps:207/1099 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 QDHDDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLG 121
            :|.:|...|..|.|.|.|.||:.||.|..||||..::|:|:||| :|..:|....|:.|..:||.
  Fly    67 EDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPY-QILPIYTNREIQLYRNKSLA 130

  Fly   122 ELPPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIETKILDAN 186
            |||||:|||:|.|.:.::..|.:|.:::|||||||||||||.:|:||.........||.:|::||
  Fly   131 ELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHSWIEQQIIEAN 195

  Fly   187 PVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYML 251
            |::||||||||.||:|||||||:||:.:..:..:.|..|..||||||||..||.:|||||:||.:
  Fly   196 PIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIFYCM 260

  Fly   252 LAGAPQQLRDKLSLGK--PDDYRYLS--GCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDD 312
            |||.....|::|.|.:  |..|.||:  ||.          .:||         :|..||     
  Fly   261 LAGLSTAERERLKLQEQSPSQYHYLAQGGCF----------TLPG---------RGDAKD----- 301

  Fly   313 YQHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAF----------EEIPDDVRGGCQVSEA 367
               |.::..|:..|.....|...|.||:||:|||||:.|          .||.|           
  Fly   302 ---FADIRAAMKVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEIDD----------- 352

  Fly   368 SEQSLTITSGLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLF 432
             ..:|...:.|||:..:.|..||..|.:     ...|..:...|....|...|||..|::|..:|
  Fly   353 -TPNLQRVAQLLGIPISALNAALTQRTI-----FVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIF 411

  Fly   433 DRIVGLINQSIPFQASN--FYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQEL 495
            .|||..||::|..|...  ..||||||.|||.|..|||||.||||.||.||:||..:|.|.||:.
  Fly   412 VRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNNSFEQLCINYANENLQQFFVGHIFKMEQDE 476

  Fly   496 YKREGLNVPEITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKSWANHYRLGLP 560
            |:.|.:|...|.|.|||.|::||..|...:.:|:|||||.||.:......::|....|       
  Fly   477 YQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEESKFPKGTDQTLLEKLHVQHGN------- 534

  Fly   561 RSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGS 625
            ||..:|...|  ....|.:||:||.|.||...|:|||.|:....|..|||...|..|..:||...
  Fly   535 RSIYVKGKTT--QTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEM 597

  Fly   626 STSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTI 690
            ......|...:.|  ||:..|..||..|.|....||||||||.....:.|:..|.:.||:.||.:
  Fly   598 PMDTAKKQPTLCV--KFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKELCVRQLRYSGMM 660

  Fly   691 SVLELMEHGYPSRVLFADLYSMYKSVLPP-------ELVSLPARTFCEAMFQSLNLSAKDFKFGI 748
            ....:...|||.|..:......|:.::||       :...| ||..||....    :..|.::|.
  Fly   661 ETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKL-ARQICEVALP----ADSDRQYGK 720

  Fly   749 TKVFFRPGKFVEFDRIMRSDPENMLAIVAKVKKWLIR---SRWVKSALGALCVIKLRNRIIYRNK 810
            ||:|.|.......: :.||  :.||..:..:::.:.|   .|::|.               || :
  Fly   721 TKLFLRDEDDASLE-LQRS--QLMLKSIVTIQRGIRRVLFRRYMKR---------------YR-E 766

  Fly   811 CVLIAQRIARGFLARKQHRPRYQG---IG----------KINKIRTNTLKTIEIASGLKMGREEI 862
            .::..||..||.|.|::::...||   :|          |...:|..|:|...::.|        
  Fly   767 AIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVRCRTIKLQALSRG-------- 823

  Fly   863 ISGVNDIYRQIDDAIKKIKMNPRITQREMDSMYTVVMANMNKLTVDLNTKLKEQQQAEEQERLRK 927
                   |....|..||:     :.:|:           .|:|..:...||.:.::|||..||::
  Fly   824 -------YLVRKDFQKKL-----LERRK-----------QNQLKKEELLKLAKMKEAEELLRLQQ 865

  Fly   928 IQEALEAERAAKEAEEQRQREEIENKRLKAEMETRR---KAAEAQRLR----QEEEDRRAALALQ 985
            ::|  :.||..:|.:|:|.:||   :|||||...|.   .||..|:.|    ::|..:...|..:
  Fly   866 LKE--QKEREQREQQEKRLQEE---QRLKAEAAARNALAMAAVQQKRRTKPVKQEAPKAPTLQAR 925

  Fly   986 EQL----------------------------EKEAKDDAKYRQQLEQE-----RRDHELALR-LA 1016
            ..|                            |.....|.:..:|:..:     ..:.:.||| |.
  Fly   926 NSLPPPPTTLIVAAPLPTRPASAVTRINTIPESPGTIDVESSKQMVDDVFRFLNDEPDAALRKLN 990

  Fly  1017 NESNGQVEDSPPVIRNGVNDASPMGPNKLISFSQVVSNIASRYLNKSENVRAQQQALGK 1075
            |.|:|.....|..:.|.::.:         .||.:  ..|:.|.......:.:::.|.|
  Fly   991 NISSGDTIRLPKSVPNNIDTS---------DFSYL--KYAATYFGGGATAQHERKPLKK 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 273/717 (38%)
MYSc_Myo6 71..754 CDD:276833 269/705 (38%)
RILP-like <968..1015 CDD:304877 11/84 (13%)
Myosin-VI_CBD 1160..1246 CDD:293129
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 275/731 (38%)
MYSc_Myo7 81..726 CDD:276832 269/705 (38%)
IQ 765..785 CDD:197470 7/20 (35%)
DUF4355 827..>887 CDD:290964 21/80 (26%)
MyTH4 1031..1239 CDD:295320 2/8 (25%)
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466266
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1389at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13140
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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