DRSC/TRiP Functional Genomics Resources

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Protein Alignment jar and myo1e.2

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001011082.1 Gene:myo1e.2 / 496494 XenbaseID:XB-GENE-5913944 Length:1093 Species:Xenopus tropicalis


Alignment Length:1182 Identity:342/1182 - (28%)
Similarity:533/1182 - (45%) Gaps:253/1182 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPD-TIKKYNGRSLGEL 123
            ||...|..:.|...::|||.||..|.|:||:..:||:|||::::.  |..| .|:.|.|.:..|.
 Frog    20 DDMVLLSKITEEAIMENLKKRYMDDYIFTYIGPVLISVNPFKQLP--YFTDREIEMYQGAAQYEN 82

  Fly   124 PPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGP----IETKILD 184
            |||::|:||...|:|.:...:|.:|:|||||||||.:.||::.|:. .....||    ::..||.
 Frog    83 PPHIYALADTMYRNMLIDGENQCVIISGESGAGKTVAAKYIMGYVS-KVSGGGPKVQHVKDIILK 146

  Fly   185 ANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFY 249
            :||:|||||||||.||||||||||:.|:.:....:..||.||::||||||:.:|::.||::|:||
 Frog   147 SNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVSQNSGERSFHIFY 211

  Fly   250 MLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQ 314
            .||.||..:.::.|.:..||.|.||:....|..:.                         :.|.:
 Frog   212 QLLEGASAEDKENLGVTSPDYYFYLNQSAVYHVDD-------------------------VSDKK 251

  Fly   315 HFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLL 379
            .|.....|:..:||....:..:..:||.:|||||:||.|     .|...|.| |:..|...:.||
 Frog   252 EFAETMLAMDVVGLGPDTQTSVLQIVAGILHLGNVAFTE-----SGNHAVVE-SQDFLAFPAYLL 310

  Fly   380 GVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIP 444
            |:||..|:..|.||.|.||.|| |..||.|.|...:|...|||||||:|:||||.:|..||:::.
 Frog   311 GIDQARLQDKLTSRKMDSKWGG-KSEVIDVTLNAEQACFTRDALAKALYTRLFDFLVEAINKAMR 374

  Fly   445 FQASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFT 509
            .....:.||||||.|||.|..|.|||||||:.|||||:.|.:..||.|||.|.:||::...|.:.
 Frog   375 KDTEEYNIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIHWNPIEYF 439

  Fly   510 DNQDIIELIEAKSN--GIFTLLD-------------EESKLPK-----PSYSHFTAEVHKSWANH 554
            :|:.:.:|||:|.:  |:.::||             :::.|.|     .|:.||     .||   
 Frog   440 NNKVVCDLIESKVSPPGVMSILDDVCATMHAKGEGADQTLLQKLQSAIGSHEHF-----NSW--- 496

  Fly   555 YRLGLPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQT 619
                               ..||::.|:||.|.|:...|.|:|.|.|...|..|:|..:.|.::.
 Frog   497 -------------------NRGFIIHHYAGKVSYDVSGFCERNRDVLFVDLIELMQSSEIPFIRE 542

  Fly   620 LFPSGSSTSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQL 684
            .||...:...:|:.:  :.|||.|.|..:|::.|.:...::|||||||.....|.:|.|....|:
 Frog   543 RFPENLNAEKKGRPS--TAGSKIKKQANDLVQTLMKCTPHYIRCIKPNETKKPRDWEDSRVKHQV 605

  Fly   685 KCSGTISVLELMEHGYPSRVLFADLYSMYKSVLPPELVSLPARTFCEA-----MFQSLNLSAKDF 744
            :..|....:.:...||..|.:|......| ::|..|  :.|.....|.     :.:|:|:.:..:
 Frog   606 EYLGLRENIRVRRAGYAYRRVFQKFLHRY-AILTRE--TWPQWRGDEKKGVMHLLRSVNMDSDQY 667

  Fly   745 KFGITKVFFR-PGKFVEFDRIMRSDPENMLAIVAK-------VKKWLIRSRWVKSALGALCVIKL 801
            :.|.||||.: |......:.:.....:|...::.|       |:|: ||.|...|:: .|...:.
 Frog   668 QLGRTKVFIKAPESLFLLEEMRERKYDNYARVIQKAWRKHTAVRKY-IRMREEASSI-VLNQKER 730

  Fly   802 RNRIIYRNKCVLIAQRIA-------RGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASG---LK 856
            |...|.||   .:...|.       |.|:.|::.......:.|.:: |..|||...:.:.   ..
 Frog   731 RRNSINRN---FVGDYIGMDGRPELRQFVGRRERIDFADVVTKYDR-RFKTLKRDLVLTPKFLYL 791

  Fly   857 MGREEIISGVNDIYRQIDDAIKKIKMNPRITQREMDSMYTVVMANMNKLTVDLNTKLKEQQQAEE 921
            :|||::..|.:.  .||.:.:|:        :.|::::.:|   :::||..|.            
 Frog   792 IGREKVKQGPDK--GQIKEVLKR--------KIELENIQSV---SLSKLQDDF------------ 831

  Fly   922 QERLRKIQEALEAERAAKEAEEQRQREEIENKRLKAEMETRRKAAEAQRLRQEEEDRRA-----A 981
                     .:..|.|...|.|...:.|..:...|               |.||:..|.     .
 Frog   832 ---------IILHEGAYDSALEGVFKTEFLSLLYK---------------RYEEKTHRKLPIKFG 872

  Fly   982 LALQEQLEKE--AKDDAKYRQQLEQERRDHELALRLANESNGQV------EDSPPVIRNGVNDAS 1038
            |.|:.:::||  |...|...:|::.:....::||   .::||:|      ...||..|....|  
 Frog   873 LQLEFKVKKEGWAPWGAAGTRQIQFQTGIGDMAL---TKANGKVLIVTIGPGLPPNSRPTRKD-- 932

  Fly  1039 PMGPNKLISFSQVVSNIASRYLNKSENVRAQQQALGKQKYDLSKWKYSELRDAINTSCDIELLEA 1103
                           |..|:|:..:.  ...|:|.|..|                .|....:|: 
 Frog   933 ---------------NRKSQYMGSAP--AGNQRANGGNK----------------KSSRPPMLQ- 963

  Fly  1104 CRQEFHRRLKVYHAWKAKNRKRTTMDENERAPRSVMEAAFKQPPLVQPIQEIVTAQHRYFRIPFM 1168
             |..|..|..|         ::.|:.....:||:      |.||             ....:.||
 Frog   964 -RMSFTSRQSV---------EQPTLPRQGASPRA------KAPP-------------TQANLDFM 999

  Fly  1169 RANAPDNTKRGL 1180
              |.||....|:
 Frog  1000 --NVPDQGAAGI 1009

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 256/723 (35%)
MYSc_Myo6 71..754 CDD:276833 252/712 (35%)
RILP-like <968..1015 CDD:304877 13/53 (25%)
Myosin-VI_CBD 1160..1246 CDD:293129 6/21 (29%)
myo1e.2NP_001011082.1 MYSc_Myo1 31..677 CDD:276829 252/712 (35%)
Myosin_TH1 717..918 CDD:368706 50/257 (19%)
SH3_MyoIe_If_like 1040..1092 CDD:212761
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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