DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and Myo1d

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:XP_036012676.1 Gene:Myo1d / 338367 MGIID:107728 Length:1010 Species:Mus musculus


Alignment Length:1230 Identity:323/1230 - (26%)
Similarity:512/1230 - (41%) Gaps:336/1230 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 RYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPHVFAIADKAIRDMRVYKLS 144
            |:.|.:|||::..::::||||: :..:|..||:::|.||.|.|.|||:|||||.|.:.|:.....
Mouse    36 RFEKGRIYTFIGEVVVSVNPYK-VLNIYGRDTVEQYKGRELYERPPHLFAIADAAYKAMKRRSKD 99

  Fly   145 QSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIETK-----ILDANPVLEAFGNAKTTRNNNSS 204
            ..|::||||||||||::||:::|:....:.:...|.:     :|.:|.||||||||||.||:|||
Mouse   100 TCIMISGESGAGKTEASKYIMQYIAAITNPSQRAEIERVKNMLLKSNCVLEAFGNAKTNRNDNSS 164

  Fly   205 RFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAPQQLRDKLSLGKPD 269
            ||||::::::|.|...:||:|::|||||||:..|...||::|.||.||.|..:|:...|.|.|  
Mouse   165 RFGKYMDINFDFKGDPIGGHINNYLLEKSRVIVQQPGERSFHSFYQLLQGGSEQMLHSLHLQK-- 227

  Fly   270 DYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHNLDKALGRLGLSDTEKL 334
                                   |..|.|:.:.|......|:|...|..:..|:..:|....|..
Mouse   228 -----------------------SLSSYNYIRVGAQLKSSINDAAEFKVVADAMKVIGFKPEEIQ 269

  Fly   335 GIYSLVAAVLHLGNIAFEEIPDD----VRGGCQVSEASEQSLTITSGLLGVDQTELRTALVSRVM 395
            .:|.::|.:|||||:.|  |.|.    :..|..||..:|        ||......:..||:.|.:
Mouse   270 TVYKILAVILHLGNLKF--IVDGDTPLIENGKVVSVIAE--------LLSTKADMVEKALLYRTV 324

  Fly   396 QSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSI-------PFQASNFYIG 453
            .:     ...:|.......|||..|||.|||||.|||..||..||..|       .....|..||
Mouse   325 AT-----GRDIIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTIHGKNTVIG 384

  Fly   454 VLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDNQDIIELI 518
            ||||.|||.|..||||||||||||||||:.|...:||.|||.|:|||:....|.:.:||.|::|:
Mouse   385 VLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIVDLV 449

  Fly   519 EAKSNGIFTLLDE-----------------ESKLPKPSYSHFTAEVHKSWANHYRLGLPRSSRLK 566
            |.:..||..:||:                 .|||.|  :.||::  .|:.|              
Mouse   450 EQQHKGIIAILDDACMNVGKVTDGMFLEALNSKLGK--HGHFSS--RKTCA-------------- 496

  Fly   567 AHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSVRG 631
            :.:.|..:..|.:||:||.|.|:...||:||.|.|....:.|:....||:|:.::|.|..:....
Mouse   497 SDKILEFDRDFRIRHYAGDVVYSAIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEGKLSITEV 561

  Fly   632 KLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELM 696
            ....::..:.||..:..|::.|......::||||||.|...:.|:......|::..|.:..:.:.
Mouse   562 TKRPLTAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVR 626

  Fly   697 EHGYPSRVLFADLYSMYKSV---------LPPELVSLPARTFCEAMFQSLNLSAKDFKFGITKVF 752
            ..|:..|..:......||.:         ||.:..:: .:......||.      |..:|.:|:|
Mouse   627 RAGFAFRQTYEKFLHRYKMISEFTWPNHDLPSDKEAV-KKLIERCGFQD------DVAYGKSKIF 684

  Fly   753 FRPGKFVEFDRIMRSDPENMLAIVAKVKKWLIRSRWVKSALGALCVIKLRNRIIYRNKCVLIAQR 817
            .|             .|..:..:.                       :||.:::.|  .||..|:
Mouse   685 IR-------------TPRTLFTLE-----------------------ELRAQMLVR--VVLFLQK 711

  Fly   818 IARGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASGLKMGRE-EIISGVNDIYRQ------IDD 875
            :.||.|||.:::            ||....||     ::..|. ::.|.::::.|:      :.|
Mouse   712 VWRGTLARMRYK------------RTKAALTI-----IRYYRRYKVKSYIHEVARRFHGVKNMRD 759

  Fly   876 AIKKIK--MNPRITQREMDSMYTVVMANMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEAERAA 938
            ..|.:|  ..|::                                      ||:.:|||::    
Mouse   760 YGKHVKWPTPPKV--------------------------------------LRRFEEALQS---- 782

  Fly   939 KEAEEQRQREEIENKRLKAEMETRRKAAEAQRLRQEEEDRRAALALQEQLEKEAKDDAKYRQQLE 1003
                       |.|:...:::.....|::..::       ||.:|..|.|:.:..|         
Mouse   783 -----------IFNRWRASQLIKTIPASDLPQV-------RAKVAAMEMLKGQRAD--------- 820

  Fly  1004 QERRDHELALRLANESN--GQVEDSPPVIRNGVNDASPMG-----PNKLIS--------FSQVVS 1053
                   |.|:.|.|.|  ....|:|......|..|:.:.     .|.|.|        ||:|..
Mouse   821 -------LGLQRAWEGNYLASKPDTPQTSGTFVPVANELKRKDKYMNVLFSCHVRKVNRFSKVED 878

  Fly  1054 N---IASRYLNKSENVRAQQQALGKQKYDLSKWKYSELRDAINTSCDIELLEACRQEFHRRLKVY 1115
            .   :..|:|.|.:..:..:.......|:|:....|..:|                    :|.|:
Mouse   879 RAIFVTDRHLYKMDPTKQYKVMKTIPLYNLTGLSVSNGKD--------------------QLVVF 923

  Fly  1116 HAWKAKNRKRTTMDENERAPRSVMEAAF-KQPPLVQPIQEIVTAQHRYFRIPFMRANAPDNTKRG 1179
            |          |.|.     :.::...| |||.....|.|:|                      |
Mouse   924 H----------TKDN-----KDLIVCLFSKQPTHESRIGELV----------------------G 951

  Fly  1180 LWYAHFDGQWIARQMELHADKPPILLVAGTDDMQMCELSLE------ETGLTRKRGAEIL 1233
            :...||..:  .|.::::...|....:.|    :.|.:|:|      :...|:.|...||
Mouse   952 VLVNHFKSE--KRHLQVNVTNPVQCSLHG----KKCTVSVETRLNQPQPDFTKNRSGFIL 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 238/715 (33%)
MYSc_Myo6 71..754 CDD:276833 238/715 (33%)
RILP-like <968..1015 CDD:304877 8/46 (17%)
Myosin-VI_CBD 1160..1246 CDD:293129 13/80 (16%)
Myo1dXP_036012676.1 MYSc_Myo1 36..686 CDD:276829 238/715 (33%)
Myosin_TH1 807..1000 CDD:399188 48/271 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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