Protein Alignment jar and Myo1d

DIOPT Version :10

• Sequence 1: NP_001014650.2
• Gene: jar / 42889
• FlyBaseID: FBgn0011225
• Length: 1268
• Species: Drosophila melanogaster
• Sequence 2: XP_036012676.1
• Gene: Myo1d / 338367
• MGIID: 107728
• Length: 1010
• Species: Mus musculus
• Alignment Length: 238
• Identity: 40/238 - (16%)
• Similarity: 78/238 - (32%)
• Gaps: 80/238 - (33%)

  Fly   100 MKNQVAKFNDLRFVGRS----------------GRGKSFSITITISSYPCQIATYTKAIKVTVDG 148
            :|...|..|::|..|.:                .:..|..:...|.|.   :|.|..|||.:...
Mouse   257 LKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSI---LAIYAGAIKSSFAP 318

  Fly   149 PREP------------------RSKQNFAYGHPGPFNPFILNAGWLDAAYMNYAWSDYFRQHQQQ 195
            |..|                  ::|:......|.....|..|:    :.:.|....:||..:...
Mouse   319 PHFPVCMLGNRTLSSRHLDICSKTKEVNNMTIPSKLWGFFCNS----SQFFNATCDEYFVHNNVT 379

  Fly   196 QVMQVP------------------------PSSAVSN--GTISNGHVISSTTTA----AGIAEPA 230
            .:..:|                        ||:..|:  |.:::.:|::..||:    .||..|:
Mouse   380 SIQGIPGLASGIITENLWSNYLPKGEIIEKPSAKSSDVLGNLNHEYVLADITTSFTLLVGIFFPS 444

  Fly   231 KDIVPVRTSSSQSVPAPTMAPGINPPSKGLPSPALLASPTSTY 273
              :..:...|::|       ..:....|.:|...:||..|:::
Mouse   445 --VTGIMAGSNRS-------GDLKDAQKSIPIGTILAILTTSF 478

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
jar	NP_001014650.2	Myosin_N	7..49	CDD:460670
		MYSc_Myo6	71..754	CDD:276833	40/238 (17%)
		CBD_MYO6-like	765..913	CDD:409646
		ERM_helical	<954..1020	CDD:466641
		MYO6_MIU_linker	1002..1093	CDD:480843
		MyUb_Myo6	1076..1116	CDD:439319
		Myosin-VI_CBD	1160..1246	CDD:465157
Myo1d	XP_036012676.1	MYSc_Myo1	36..686	CDD:276829	40/238 (17%)
		Myosin_TH1	807..1000	CDD:461801