DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and Myo1d

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_037115.2 Gene:Myo1d / 25485 RGDID:621321 Length:1006 Species:Rattus norvegicus


Alignment Length:1237 Identity:329/1237 - (26%)
Similarity:519/1237 - (41%) Gaps:336/1237 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 FLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPHVFAIADKAIRD 137
            |:.||:.|:.|.:|||::..::::||||: :..:|..|||::|.||.|.|.|||:|||||.|.:.
  Rat    25 FMANLRLRFEKGRIYTFIGEVVVSVNPYK-VLNIYGRDTIEQYKGRELYERPPHLFAIADAAYKA 88

  Fly   138 MRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIETK-----ILDANPVLEAFGNAKT 197
            |:.......|::||||||||||::||:::|:....:.:...|.:     :|.:|.||||||||||
  Rat    89 MKRRSKDTCIMISGESGAGKTEASKYIMQYIAAITNPSQRAEIERVKNMLLKSNCVLEAFGNAKT 153

  Fly   198 TRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAPQQLRDK 262
            .||:|||||||::::::|.|...:||:|::|||||||:..|...||::|.||.||.|..:|:...
  Rat   154 NRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVIVQQPGERSFHSFYQLLQGGSEQMLHS 218

  Fly   263 LSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHNLDKALGRLG 327
            |.|.|                         |..|.|:.:.|......|:|...|..:..|:..:|
  Rat   219 LHLQK-------------------------SLSSYNYIRVGAQLKSSINDAAEFKVVADAMKVIG 258

  Fly   328 LSDTEKLGIYSLVAAVLHLGNIAFEEIPDD----VRGGCQVSEASEQSLTITSGLLGVDQTELRT 388
            ....|...:|.::||:|||||:.|  |.|.    :..|..||..:|        ||......:..
  Rat   259 FKPEEIQTVYKILAAILHLGNLKF--IVDGDTPLIENGKVVSVIAE--------LLSTKADMVEK 313

  Fly   389 ALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIPFQ------- 446
            ||:.|.:.:     ...:|.......|||..|||.|||||.|||..||..||..|..:       
  Rat   314 ALLYRTVAT-----GRDIIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTVH 373

  Fly   447 ASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDN 511
            ..|..||||||.|||.|..||||||||||||||||:.|...:||.|||.|:|||:....|.:.:|
  Rat   374 GKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNN 438

  Fly   512 QDIIELIEAKSNGIFTLLDE-----------------ESKLPKPSYSHFTAEVHKSWANHYRLGL 559
            |.|::|:|.:..||..:||:                 .|||.|  :.||::  .|:.|       
  Rat   439 QIIVDLVEQQHKGIIAILDDACMNVGKVTDGMFLEALNSKLGK--HGHFSS--RKTCA------- 492

  Fly   560 PRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSG 624
                   :.:.|..:..|.:||:||.|.|:...||:||.|.|....:.|:....||:|:.::|.|
  Rat   493 -------SDKILEFDRDFRIRHYAGDVVYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEG 550

  Fly   625 SSTSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGT 689
            ..:........::..:.||..:..|::.|......::||||||.|...:.|:......|::..|.
  Rat   551 KLSITEVTKRPLTAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGL 615

  Fly   690 ISVLELMEHGYPSRVLFADLYSMYKSV---------LPPELVSLPARTFCEAMFQSLNLSAKDFK 745
            :..:.:...|:..|..:......||.:         ||.:..:: .:......||.      |..
  Rat   616 LENVRVRRAGFAFRQTYEKFLHRYKMISEFTWPNHDLPSDKEAV-KKLIERCGFQD------DVA 673

  Fly   746 FGITKVFFRPGKFVEFDRIMRSDPENMLAIVAKVKKWLIRSRWVKSALGALCVIKLRNRIIYRNK 810
            :|.||:|.|             .|..:..:.                       :||.:::.|  
  Rat   674 YGKTKIFIR-------------TPRTLFTLE-----------------------ELRAQMLVR-- 700

  Fly   811 CVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASGLKMGRE-EIISGVNDIYRQ-- 872
            .||..|::.||.|||.:::            ||....||     ::..|. ::.|.::::.|:  
  Rat   701 VVLFLQKVWRGTLARMRYK------------RTKAALTI-----IRYYRRYKVKSYIHEVARRFH 748

  Fly   873 ----IDDAIKKIK--MNPRITQREMDSMYTVVMANMNKLTVDLNTKLKEQQQAEEQERLRKIQEA 931
                :.|..|.:|  ..|::                                      ||:.:||
  Rat   749 GVKNMRDYGKHVKWPTPPKV--------------------------------------LRRFEEA 775

  Fly   932 LEAERAAKEAEEQRQREEIENKRLKAEMETRRKAAEAQRLRQEEEDRRAALALQEQLEKEAKDDA 996
            |::               |.|:...:::.....|::..::       ||.:|..|.|:.:..|  
  Rat   776 LQS---------------IFNRWRASQLIKTIPASDLPQV-------RAKVAAMEMLKGQRAD-- 816

  Fly   997 KYRQQLEQERRDHELALRLANESN--GQVEDSPPVIRNGVNDASPMG-----PNKLIS------- 1047
                          |.|:.|.|.|  ....|:|......|..|:.:.     .|.|.|       
  Rat   817 --------------LGLQRAWEGNYLASKPDTPQTSGTFVPVANELKRKDKYMNVLFSCHVRKVN 867

  Fly  1048 -FSQVVSN---IASRYLNKSENVRAQQQALGKQKYDLSKWKYSELRDAINTSCDIELLEACRQEF 1108
             ||:|...   :..|:|.|.:..:..:.......|:|:....|..:|                  
  Rat   868 RFSKVEDRAIFVTDRHLYKMDPTKQYKVMKTIPLYNLTGLSVSNGKD------------------ 914

  Fly  1109 HRRLKVYHAWKAKNRKRTTMDENERAPRSVMEAAF-KQPPLVQPIQEIVTAQHRYFRIPFMRANA 1172
              :|.|:|          |.|.     :.::...| |||.....|.|:|                
  Rat   915 --QLVVFH----------TKDN-----KDLIVCLFSKQPTHESRIGELV---------------- 946

  Fly  1173 PDNTKRGLWYAHFDGQWIARQMELHADKPPILLVAGTDDMQMCELSLE------ETGLTRKRGAE 1231
                  |:...||..:  .|.::::...|....:.|    :.|.:|:|      :...|:.|...
  Rat   947 ------GVLVNHFKSE--KRHLQVNVTNPVQCSLHG----KKCTVSVETRLNQPQPDFTKNRSGF 999

  Fly  1232 IL 1233
            ||
  Rat  1000 IL 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 244/722 (34%)
MYSc_Myo6 71..754 CDD:276833 244/722 (34%)
RILP-like <968..1015 CDD:304877 8/46 (17%)
Myosin-VI_CBD 1160..1246 CDD:293129 13/80 (16%)
Myo1dNP_037115.2 MYSc_Myo1 24..682 CDD:276829 244/722 (34%)
Actin-binding. /evidence=ECO:0000255|PROSITE-ProRule:PRU00782 572..594 7/21 (33%)
Interaction with calmodulin. /evidence=ECO:0000269|PubMed:8034741 776..896 28/157 (18%)
Myosin_TH1 803..996 CDD:399188 48/271 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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