DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and Myo1e

DIOPT Version :10

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_775124.1 Gene:Myo1e / 25484 RGDID:3144 Length:1107 Species:Rattus norvegicus


Alignment Length:1203 Identity:333/1203 - (27%)
Similarity:542/1203 - (45%) Gaps:248/1203 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELP 124
            ||...|..:.|::.::|||.||..|.|:||:.::||:|||:::: ..:....|:.|.|.:..|.|
  Rat    22 DDMVLLSKITESSIVENLKKRYMDDYIFTYIGSVLISVNPFKQM-PYFGEKEIEMYQGAAQYENP 85

  Fly   125 PHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAG-----PIETKILD 184
            ||::|:||...|:|.:.:.:|.:|:|||||||||.:.||::.|:  |..|.|     .::..||.
  Rat    86 PHIYALADSMYRNMIIDRENQCVIISGESGAGKTVAAKYIMSYV--SRVSGGGPKVQHVKDIILQ 148

  Fly   185 ANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFY 249
            :||:|||||||||.||||||||||:.|:.:....:..||.||::||||||:..::..||::|:||
  Rat   149 SNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEKSRVVMRNPGERSFHIFY 213

  Fly   250 MLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQ 314
            .|:.||..:.:..|.:...|.|.|||              :.||.|..:           |||.:
  Rat   214 QLIEGASPEQKQSLGITSMDYYYYLS--------------LSGSYKVDD-----------IDDKR 253

  Fly   315 HFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLL 379
            .|.....|:..:|:...|:..:..:||.:||||||.|:|:      |...:..||:.|...:.||
  Rat   254 DFQETLHAMNVIGIFSEEQTLVLQIVAGILHLGNINFKEV------GNYAAVESEEFLAFPAYLL 312

  Fly   380 GVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIP 444
            |::|..|:..|.||.|.||.|| |...|.|.|.:.:|...|||||||:::|:||.:|..||:::.
  Rat   313 GINQDRLKEKLTSRQMDSKWGG-KSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAME 376

  Fly   445 FQASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFT 509
            .....:.||||||.|||.|..|.|||||||:.|||||:.|.:..||.|||.|.:||:....|.:.
  Rat   377 KDHEEYNIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYF 441

  Fly   510 DNQDIIELIEAKSN--GIFTLLD-------------EESKLPK-----PSYSHFTAEVHKSWANH 554
            :|:.:.:|||:|.|  ||.::||             :::.|.|     .|:.||     .||   
  Rat   442 NNKIVCDLIESKVNPPGIMSILDDVCATMHAVGEGADQTLLQKLQMQIGSHEHF-----NSW--- 498

  Fly   555 YRLGLPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQT 619
                               .:||::.|:||.|.|:.:.|.|:|.|.|...|..|:|..:.|.:::
  Rat   499 -------------------NQGFIIHHYAGKVSYDMDGFCERNRDVLFMDLIELMQSSELPFIKS 544

  Fly   620 LFPSGSSTSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQL 684
            |||.......:|:..  :.|||.|.|..:|:..|.:...::|||||||.....:.:|.|....|:
  Rat   545 LFPENLQADKKGRPT--TAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKKPKDWEESRVKHQV 607

  Fly   685 KCSGTISVLELMEHGYPSRVLFADLYSMYKSVLPPELVSLPARTFCEA-----MFQSLNLSAKDF 744
            :..|....:.:...||..|.:|......| ::|..  .:.|.....|.     :.||:|:.:..|
  Rat   608 EYLGLKENIRVRRAGYAYRRVFQKFLQRY-AILTK--ATWPVWRGDEKQGVLHLLQSVNMDSDQF 669

  Fly   745 KFGITKVFFR-PGKFVEFDRIMRSDPENMLAIVAKV-KKWLIRSRWVKSALGA--LCVIKLRNRI 805
            :.|.:|||.: |......:.:.....:....::.|. :|::.|.::|:....|  |.:.|...| 
  Rat   670 QLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKTWRKFVARKKYVQMREDASDLLLNKKERR- 733

  Fly   806 IYRNKCVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASGLKMGREEIISGVNDIY 870
              ||.   |.:.....::..::|....|.:||..|        |:.|               ||.
  Rat   734 --RNS---INRNFIGDYIGMEEHPELQQFVGKREK--------IDFA---------------DIV 770

  Fly   871 RQIDDAIKKIKMNPRITQREMDSMYTVVMANMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEAE 935
            .:.|...|.:|.:..:|.:   .:|.:                                      
  Rat   771 TKYDRRFKGVKRDLLLTPK---CLYLI-------------------------------------- 794

  Fly   936 RAAKEAEEQRQREEIENKRLKAEMETRRKAAEAQRLRQEEEDRRAALALQEQ-----LEKEAKDD 995
              .:|..:|...:.:..:.||.::|..|..:.:....|::     ...|.||     ||...|.:
  Rat   795 --GREKVKQGPDKGLVKEVLKRKIEVERILSVSLSTMQDD-----IFILHEQEYDSLLESVFKTE 852

  Fly   996 ------AKYRQQLEQE---RRDHELALRLANESNGQVEDSPPVIRNGVNDASPMGPNKLISFSQV 1051
                  .:|.::.:::   :..:.|.|:|..|:.|...               .|.::.:.|.|.
  Rat   853 FLSLLTKRYEEKTQKQLPLKFSNTLELKLKKENWGPWS---------------AGGSRQVQFYQG 902

  Fly  1052 VSNIA-----SRYLNKSENVRAQQQALGKQKYDLSKWKYSELRDAINTSCDIELLEA---CRQEF 1108
            ..::|     ::.|..|......:.|...::..:|...||   ...|.:..:....|   |.:..
  Rat   903 FGDLAILKPSNKVLQVSIGPGLPKNARPTRRNTVSSRGYS---GGTNNNYPMRAAPAPPGCHRNG 964

  Fly  1109 HRRLKVYHAWKAKNRKRTTMDENERAPRSVMEAAFKQPPLVQPIQEIVTAQHRYFRIP----FMR 1169
            ..|.:..|..:|..        |:|:.:..:..:..:|||  |.|: .|...|..:.|    |::
  Rat   965 LTRNQFVHPPRASG--------NQRSNQKSLYTSMARPPL--PRQQ-STGSDRLSQTPESLDFLK 1018

  Fly  1170 ANAPDNTKRGLWYAHFDGQWIARQMELHADKPP 1202
              .||....|          :.||.   ..:||
  Rat  1019 --VPDQGAAG----------VRRQT---TSRPP 1036

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..49 CDD:460670
MYSc_Myo6 71..754 CDD:276833 250/712 (35%)
CBD_MYO6-like 765..913 CDD:409646 25/150 (17%)
ERM_helical <954..1020 CDD:466641 16/79 (20%)
MYO6_MIU_linker 1002..1093 CDD:480843 15/98 (15%)
MyUb_Myo6 1076..1116 CDD:439319 7/42 (17%)
Myosin-VI_CBD 1160..1246 CDD:465157 10/47 (21%)
Myo1eNP_775124.1 MYSc_Myo1 33..679 CDD:276829 250/712 (35%)
Actin-binding. /evidence=ECO:0000255 581..591 6/9 (67%)
Myosin_TH1 719..920 CDD:461801 45/292 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 920..1052 28/146 (19%)
SH3_MyoIe_If_like 1055..1106 CDD:212761
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.