DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and Myo5b

DIOPT Version :10

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:XP_008770307.1 Gene:Myo5b / 25132 RGDID:621347 Length:1854 Species:Rattus norvegicus


Alignment Length:1430 Identity:400/1430 - (27%)
Similarity:633/1430 - (44%) Gaps:291/1430 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VWVRDAAEGYIQGRIT---EIGAKEFEVTPTDRKYPKRTCHFDDIHSSCDGPQD----------- 58
            ||:.|..|.:....:|   :.|.:..::...|          |.|   .|.|.|           
  Rat    21 VWIPDPDEVWRSAELTKDYKDGDESLQLRLED----------DTI---LDYPIDVQNNQVPFLRN 72

  Fly    59 ------HDDNCELMLLNEATFLDNLKTRYYK-DKIYTYVANILIAVNPYREIKELYAPDTIKKYN 116
                  .:|...|..|:|...|.|||.|:.: :.||||...:|:|:|||.:: .:|..|.|..|:
  Rat    73 PDILVGENDLTALSHLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYEQL-PIYGQDVIYAYS 136

  Fly   117 GRSLGELPPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGP--IE 179
            |:::|::.||:||:|::|.:.|...:.:||||||||||||||.|.||.::|......||..  ||
  Rat   137 GQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNIE 201

  Fly   180 TKILDANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERN 244
            .|:|.::|::||.||||||||:|||||||:||:.:|.|..::|..:..|||||||:..|:.:|||
  Rat   202 EKVLASSPIMEAIGNAKTTRNDNSSRFGKYIEIGFDKKYHIIGANMRTYLLEKSRVVFQADDERN 266

  Fly   245 YHVFYMLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPI 309
            ||:||.|.|.|......:|:|...:|:.|    |.:..|...|.                     
  Rat   267 YHIFYQLCAAASLPEFKELALTCAEDFFY----TAHGGNTTIEG--------------------- 306

  Fly   310 IDDYQHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTI 374
            :||.:.|....:||..||:.::.::.|:.::|::||||::..:...|.  ..|.:|...|. |:.
  Rat   307 VDDAEDFEKTRQALTLLGVRESHQISIFKIIASILHLGSVEIQAERDG--DSCSISPQDEH-LSN 368

  Fly   375 TSGLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLI 439
            ...|||::.:::...|..|.:.:....:..|     :.:.:..|||:||||.||::||..||..|
  Rat   369 FCRLLGIEHSQMEHWLCHRKLVTTSETYVKT-----MSLQQVVNARNALAKHIYAQLFSWIVEHI 428

  Fly   440 NQSIPFQAS---NFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGL 501
            |:::  |.|   :.:||||||.|||.|.:||||||||||.|||||:.||.::.|.|||.|.:|.:
  Rat   429 NKAL--QTSLKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQI 491

  Fly   502 NVPEITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKSWANHYRLGLPRSSRLK 566
            ....|.|.|||..|:|||||. ||..|||||.|:||.:..::..::::..:|......||.|   
  Rat   492 PWTLIDFYDNQPCIDLIEAKL-GILDLLDEECKVPKGTDQNWAQKLYERHSNSQHFQKPRMS--- 552

  Fly   567 AHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLF---------- 621
                   ...|:|.|||..|.|.::.|:|||.|.::.....:::....||:..||          
  Rat   553 -------NTAFIVIHFADKVEYLSDGFLEKNRDTVYEEQINILKASKFPLVADLFRDDKDSVPAT 610

  Fly   622 -----PSGSSTSVR---------GKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMID 672
                 .|.|..:||         .|.:..|||.:|:|.|..|||.|.....:::||||||.:.:.
  Rat   611 NTAKSRSSSKINVRSSRPLMKAPNKEHKKSVGYQFRTSLNLLMETLNATTPHYVRCIKPNDEKLP 675

  Fly   673 RQFEGSLALAQLKCSGTISVLELMEHGYPSRVLFADLYSMYKSVLPP-ELV-SLPARTFCEAMFQ 735
            ..|:...|:.||:..|.:..:.:...|||||..:.|.::.|:.::.. ||. :...:..|:::.:
  Rat   676 FHFDPKRAVQQLRACGVLETIRISAAGYPSRWTYHDFFNRYRVLMKKRELANTTDKKNICKSVLE 740

  Fly   736 SLNLSAKDFKFGITKVFFRPGKFVEFDRIMRSDP--ENMLAIVAKVKKWLIRSRW---------- 788
            ||......|:||.||:|||.|:....:: :|:|.  |..:.|...|:.||.|.::          
  Rat   741 SLIKDPDKFQFGRTKIFFRAGQVAYLEK-LRADKFREATIMIQKTVRGWLQRVKYRRLRAATLTL 804

  Fly   789 -----------------------------------------------VKSALGALCVIKLRNRII 806
                                                           ::|...|:||.:...:::
  Rat   805 QRFCRGYLARRLTEHLRRTRAAIVFQKQYRMLKARRAYCRVRRAAVIIQSYTRAMCVRRSYRQVL 869

  Fly   807 YRNKCVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASGLK-------------MG 858
            ..:|..:| |:.|||::||: |..|.:....:.:.....||..:....||             :|
  Rat   870 TEHKATII-QKYARGWMARR-HFQRQRDAAIVIQCAFRRLKARQALKALKIEARSAEHLKRLNVG 932

  Fly   859 REEIISGVNDIYRQIDDAIKKIKMNPRITQREMDSMYTVVMA-NMNKLTVDLNTKLKEQQQA--- 919
            .|   :.|..:.|:|||..|:.|     |..|..|..|...| .:.||..:| .:.::.|:|   
  Rat   933 ME---NKVVQLQRKIDDQNKEFK-----TLSEQLSAVTSTHAMEVEKLKKEL-ARYQQNQEADPS 988

  Fly   920 ----EEQERLRKIQEALEAERAAKEAEEQRQREEI---------ENKRLKAEME------TRRKA 965
                ||.:.||...:...:||...|....|:..|:         ||..||.|.|      .|:..
  Rat   989 LQLQEEVQSLRTELQKAHSERRVLEDTHNRENGELRKRVADLEHENALLKDEKEHLNNQILRQSK 1053

  Fly   966 AEAQRLRQEEEDRRAALALQEQLEKE-------AKDDAKYRQQLEQERRDHELALRLANESNGQV 1023
            ||:.:...||.     |.::::||:|       .|:.::..|:.|..|.:.:......|.||...
  Rat  1054 AESSQSSVEEN-----LLIKKELEEERSRYQNLVKEYSQLEQRYENLRDEQQTPGHRKNPSNQSS 1113

  Fly  1024 EDS----PPVIRNGVND-------ASPMGPNKLISFSQVVSNIASRYLNKSENVRAQQQALGKQK 1077
            .:|    |.:..:.:.|       ...:|..|......|...:..|.....:..:..|..|.|::
  Rat  1114 LESDSNYPSISTSEIGDTEDALQQVEEIGIEKAAMDMTVFLKLQKRVRELEQERKKLQVQLEKEQ 1178

  Fly  1078 YDLSKWKYSELRDA--INTSCDIELLEACRQEFHRRLKVYHAWKAKN-----RK----RTTMDEN 1131
            .|..|.:..:..:.  ::...||......|||.....|     |.||     ||    :...|.:
  Rat  1179 QDSKKVQVEQQNNGLDVDQDADIAYNSLKRQELESENK-----KLKNDLNELRKAVADQAMQDNS 1238

  Fly  1132 ERAPRSVMEAAFKQPPLVQPIQEIVTAQHRYFRIPFMRAN---------APDNTKRGLWYAHFDG 1187
            ..:..........|..|.....|:...:....|...|.|:         .|:...|..|      
  Rat  1239 THSSPDSYSLLLNQLKLANEELEVRKEEVLILRTQIMNADQRRLSGKNMEPNINARTSW------ 1297

  Fly  1188 QWIARQMELHADKPPILLV--------AGTDDM----QMCELSLEETGLTRKRGAEILEHEFNRE 1240
                ...|.|.|:...:..        :.|:|.    :..||.|...||  |:.|.:||.:...:
  Rat  1298 ----PNSEKHVDQEDAIEAYHGVCQTNSQTEDWGYLNEDGELGLAYQGL--KQVARLLEAQLQAQ 1356

  Fly  1241  1240
              Rat  1357  1356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..49 CDD:460670 8/43 (19%)
MYSc_Myo6 71..754 CDD:276833 258/714 (36%)
CBD_MYO6-like 765..913 CDD:409646 43/220 (20%)
ERM_helical <954..1020 CDD:466641 18/78 (23%)
MYO6_MIU_linker 1002..1093 CDD:480843 17/103 (17%)
MyUb_Myo6 1076..1116 CDD:439319 8/41 (20%)
Myosin-VI_CBD 1160..1246 CDD:465157 20/102 (20%)
Myo5bXP_008770307.1 MYSc_Myo5 91..759 CDD:276831 258/714 (36%)
IQ 773..795 CDD:197470 6/21 (29%)
IQ 821..842 CDD:197470 0/20 (0%)
IQ 871..891 CDD:197470 9/21 (43%)
SMC_prok_B 906..>1268 CDD:274008 81/380 (21%)
Myo5b_CBD 1480..1851 CDD:271261
Blue background indicates that the domain is not in the aligned region.

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