DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and hum-6

DIOPT Version :10

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_508420.1 Gene:hum-6 / 180539 WormBaseID:WBGene00002039 Length:2098 Species:Caenorhabditis elegans


Alignment Length:1387 Identity:391/1387 - (28%)
Similarity:600/1387 - (43%) Gaps:274/1387 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VWVRDA-AEGYI----------QGR---ITEIGAKEFEVTPTDRKYPKRTCHFDDIHSSCDGPQD 58
            :|:... .||.|          .||   |.::|.:::  ...||:.  |..|...:       |.
 Worm    10 IWIEPGKTEGSIPIGARVIDQDHGRLKVIDDLGNEQW--LSADRRV--RLMHPTSV-------QG 63

  Fly    59 HDDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGEL 123
            .:|.|:|...:|:..|.||..||.:..||.|..:||||||||.:| .:|..|.|:.|..:.:|||
 Worm    64 VEDMCQLGDFHESAILRNLFIRYREKLIYAYTGSILIAVNPYMDI-AIYTADEIRMYKRKRIGEL 127

  Fly   124 PPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIETKILDANPV 188
            |||:|||||.|..:||..|.:||:|:|||||||||||||.:|::|.........||.::|:||||
 Worm   128 PPHIFAIADNAYTNMRREKKNQSVIISGESGAGKTESTKLVLQFLATISGQHSWIEQQVLEANPV 192

  Fly   189 LEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLA 253
            |||||||||.||:|||||||:|:||::....:.|..|..||||||||.|||..|||||:||.|||
 Worm   193 LEAFGNAKTIRNDNSSRFGKYIDVHFNESGSIEGAKIEQYLLEKSRIVTQSENERNYHIFYCLLA 257

  Fly   254 GAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHN 318
            |..::.:.:|.||...||.|               ||.|...:...:          ||......
 Worm   258 GLSREEKSELELGTAADYYY---------------LIQGKTLTAEGR----------DDAADLAE 297

  Fly   319 LDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLLGVDQ 383
            :..|:..|.:::.|...|:.|:|::||:|||.|.:..:|......|::.|  :|...:.||.:.:
 Worm   298 IRSAMRVLMINEQEIGSIFKLLASLLHIGNIRFRQNTNDNMESVDVADPS--TLVRIAKLLQLHE 360

  Fly   384 TELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSI--PFQ 446
            ..|..|:.::.:.:     :...::..|...:|.:||||||||||.:||..||..:|.:|  |.|
 Worm   361 QNLLDAITTKSLVT-----REERVISRLNGQQAVDARDALAKAIYGKLFIHIVRRVNDAIYKPSQ 420

  Fly   447 ASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDN 511
            :....||:|||.|||.|..|||||.|||:.||.||:||..::.|.||:.|..|.:|...|.|.||
 Worm   421 SRRTSIGILDIFGFENFESNSFEQLCINFANETLQQFFVHHVFKMEQKEYDEEHINWRHIKFVDN 485

  Fly   512 QDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKSWANHYRLGLPRSSRLKAHRTLRDEEG 576
            |..::||..:...|.:|:||||..||.:......::|.:...:.....|:|...:|         
 Worm   486 QATVDLIAQRPLNILSLIDEESIFPKGTDKTMLLKLHSTHGRNELYLQPKSELQRA--------- 541

  Fly   577 FLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPS-GSSTSVRGKLNFISVGS 640
            |.|.||||.|.|||..|:|||.|:..|.|..|:.....|.|..||.. ...||.|.|   ::||:
 Worm   542 FGVTHFAGNVFYNTRGFLEKNRDSFSADLSVLISSSKMPFLARLFDDIEYDTSSRKK---VTVGN 603

  Fly   641 KFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGYPSRVL 705
            :|:..|.:||.:|.|....||||||||........:..|.|.||:.||.:..:::...|||.|..
 Worm   604 QFRRSLEQLMSQLTQTHPFFIRCIKPNEMKRALVMDRDLVLRQLRYSGMMETIKIRRSGYPIRHD 668

  Fly   706 FADLYSMYKSVL-----PPELVSL--PARTFCEAMFQSLNLSAKDFKFGITKVFFRPGKFV---- 759
            :......|:.::     |...:.|  .|:..|..:   |..:| |::.|.||||.:....:    
 Worm   669 YYPFVFRYRVLVSSIQGPVNRIDLHDAAKKICHMI---LGTNA-DYQLGKTKVFLKDKHDLVLEQ 729

  Fly   760 EFDRIMRSDPENMLAIVAKVKKWLIRSRWVKSALGALCVIKLRNRIIYRNKCVLIAQRIARGFLA 824
            |:.||::   :..:.|...|::||:|..:.|....|:.:                 |...|||..
 Worm   730 EYYRILK---DKAIVIQKNVRRWLVRKDFEKQRQAAVTI-----------------QTAWRGFDQ 774

  Fly   825 RKQHRPRYQGIGKINKIRTNTLKTIEIASGLKMGREEIIS------GVNDIYRQIDDAIKKIKMN 883
            ||::|....|..::..:    |::.::.|..:..|:.||.      | :.:.||:.:   |.|..
 Worm   775 RKRYRQIISGFSRLQAV----LRSRQLVSHYQTLRKTIIQFQAVCRG-SLVRRQVGE---KRKRG 831

  Fly   884 PRITQREMDSMYTVVMANMNKLTVDLNTKL--------KEQQQAEEQER---------------- 924
            .:....|:.|..:|:..:..:|...|...|        .|...|:...|                
 Worm   832 EKAPLTEVSSTASVISDSHEELVGHLFDFLPSDGKDSGNENDSADSSRRGSYSRLHTSPVMPPAN 896

  Fly   925 -----------LRKIQ------EALEAERAAKEAEEQRQREEIENKRLKAEMETRRKAAEAQRLR 972
                       |.|.|      ...:|:..|...::..:...:.:....|::..........|..
 Worm   897 IPRVDSYVDEDLSKYQFGKYAATFFQAQATATHVKKPLKTALLTHTEPSAQLAALTAWTTILRFM 961

  Fly   973 QEEEDRRAALALQEQLEKEAKDDAKYRQQLEQERRDHELALRLANESNGQVEDSPPVIRNGVNDA 1037
            .:..|.:.......::..:.....|....|.::...|:|...:.:...|..:    .::.|    
 Worm   962 GDLADVKPGSTNGSEVYDKTPVMIKLYATLGKKFSAHDLEEAMLSSEYGGAK----TLKKG---- 1018

  Fly  1038 SPMGPNKLISFS---------QVVSNIASRYLNKSENVRAQQQALGKQKYDLSKWKY-------- 1085
              || .||||.:         ...|:|:|..:..|.|...:    .|....|.|..|        
 Worm  1019 --MG-RKLISMTLKRKGKINGSDTSSISSDSVYSSFNAMLE----NKPMTSLDKLHYIIGLGILR 1076

  Fly  1086 SELRDAINTSCDIELLEACRQEFHR--RLKVYHAWKAKNRKRTTMDENERAPRSVMEAAFKQPPL 1148
            .:|||.|  .|.:     |:|..:.  :|.....|               ...|:....|     
 Worm  1077 EDLRDEI--YCQL-----CKQLSNNPSKLSAARGW---------------ILLSLCVGCF----- 1114

  Fly  1149 VQPIQEIVTAQHRYFRIPFMRANAPDNTKRGLWYAHFDGQWIAR------------QMELHAD-- 1199
             .|.:..:.     :...|:|...|    .|..|:.:....:.|            .:||.|:  
 Worm  1115 -APSERFIK-----YLFCFIRERGP----AGTGYSKYIEDRLRRTQVNGTRHQPPSYVELQANKS 1169

  Fly  1200 -KPPILLV-------------AGTDDMQMCELSLEETGLTRKRGAEILEHEFNREWERNGGKAY- 1249
             ||.:|.|             :.|...::|:...|:.|||...|..:....|::......|..: 
 Worm  1170 QKPVVLAVTFMDGSVKTLCADSATTAAELCKQLAEKVGLTNSFGFSLYIALFDKVSSLGSGTDHV 1234

  Fly  1250 -----------KNLGAAKPNGP 1260
                       |..|..:.|.|
 Worm  1235 MDAISQCEQYAKEQGRQERNAP 1256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..49 CDD:460670 12/54 (22%)
MYSc_Myo6 71..754 CDD:276833 270/692 (39%)
CBD_MYO6-like 765..913 CDD:409646 30/153 (20%)
ERM_helical <954..1020 CDD:466641 7/65 (11%)
MYO6_MIU_linker 1002..1093 CDD:480843 23/107 (21%)
MyUb_Myo6 1076..1116 CDD:439319 11/49 (22%)
Myosin-VI_CBD 1160..1246 CDD:465157 21/113 (19%)
hum-6NP_508420.1 MYSc_Myo7 76..720 CDD:276832 270/692 (39%)
CBD_MYO6-like 738..>808 CDD:409646 18/90 (20%)
IQ 757..779 CDD:197470 8/38 (21%)
MyTH4 929..1168 CDD:214535 45/290 (16%)
FERM1_F1_Myosin-VII 1172..1270 CDD:340612 16/85 (19%)
B41 1174..1388 CDD:214604 15/83 (18%)
FERM_C1_MyoVII 1382..1480 CDD:270019
SH3 1481..1544 CDD:473055
MyTH4 1624..1772 CDD:214535
FERM2_F1_Myosin-VII 1777..1875 CDD:340613
B41 1779..1993 CDD:214604
FERM_C2_MyoVII 1989..2087 CDD:270020
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.