DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and Myo1c

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001357540.1 Gene:Myo1c / 17913 MGIID:106612 Length:1063 Species:Mus musculus


Alignment Length:1093 Identity:329/1093 - (30%)
Similarity:518/1093 - (47%) Gaps:197/1093 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 AKEFEVTPTDR----KYPKRTCHF----DDIHSSCD---------GPQDHDDNCELMLL----NE 70
            |.:.|:.||..    .:|.|.|..    |.:..:.:         |.||      .:||    :|
Mouse     2 ALQVELIPTGEIIRVVHPHRPCKLALGSDGVRVTMESALTARDRVGVQD------FVLLENFTSE 60

  Fly    71 ATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPHVFAIADKAI 135
            |.|::||:.|:.::.||||:..:|::|||||:: ::|:...:::|.|.|..|:|||:||:||...
Mouse    61 AAFIENLRRRFRENLIYTYIGPVLVSVNPYRDL-QIYSRQHMERYRGVSFYEVPPHLFAVADTVY 124

  Fly   136 RDMRVYKLSQSIIVSGESGAGKTESTKYLLKY---LCYSHDSAGPIETKILDANPVLEAFGNAKT 197
            |.:|..:..|::::||||||||||:||.||::   .|.:.:..|.:..::|.:||||||||||||
Mouse   125 RALRTERRDQAVMISGESGAGKTEATKRLLQFYAETCPAPERGGAVRDRLLQSNPVLEAFGNAKT 189

  Fly   198 TRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAPQQLRDK 262
            .||:|||||||:::|.:|.|...|||:|..|||||||:..|:..|||:||||.||.|..::...:
Mouse   190 LRNDNSSRFGKYMDVQFDFKGAPVGGHILSYLLEKSRVVHQNHGERNFHVFYQLLEGGEEETLRR 254

  Fly   263 LSLGK-PDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGP-LKDPIIDDYQHFHNLDKALGR 325
            |.|.: |..|.||                          .||. .|...|:|...:..:.|||..
Mouse   255 LGLERNPQSYLYL--------------------------VKGQCAKVSSINDKSDWKVMRKALSV 293

  Fly   326 LGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLLGVDQTELRTAL 390
            :..::.|...:.|:||:|||||||.|..   |.....||:  :|..|...:.||||:.|.||.||
Mouse   294 IDFTEDEVEDLLSIVASVLHLGNIHFAA---DEDSNAQVT--TENQLKYLTRLLGVEGTTLREAL 353

  Fly   391 VSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSI-------PFQAS 448
            ..|.:.:     ||..::.||.:.:|:.||||||||:|||.|..:|..||:|:       |...|
Mouse   354 THRKIIA-----KGEELLSPLNLEQAAYARDALAKAVYSRTFTWLVRKINRSLASKDAESPSWRS 413

  Fly   449 NFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDNQD 513
            ...:|:|||.|||.|..||||||||||||||||:.|.:..||:|||.|:.||:....:.:.:|:.
Mouse   414 TTVLGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQYFNNKI 478

  Fly   514 IIELIEAKSNGIFTLLDEESKLPKPSYS-------HFTAEVHKSWANHYRLGLPRSSRLKAHRTL 571
            |.:|:|.|..||.::||||...|..:..       ..|.:.|..:..|      :.:..|..::|
Mouse   479 ICDLVEEKFKGIISILDEECLRPGEATDLTFLEKLEDTVKPHPHFLTH------KLADQKTRKSL 537

  Fly   572 RDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSVRGKLNFI 636
             |...|.:.|:||.|.|:...|::||||.|..:|:..:....||::...|   ..:.:..|....
Mouse   538 -DRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKETMCSSMNPIMAQCF---DKSELSDKKRPE 598

  Fly   637 SVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGYP 701
            :|.::||..|.:|:|.|......:|||||||......:|:..|...|:|..|.:..|.:...|:.
Mouse   599 TVATQFKMSLLQLVEILRSKEPAYIRCIKPNDAKQPGRFDEVLIRHQVKYLGLMENLRVRRAGFA 663

  Fly   702 SRVLFADLYSMYKSVLP---PELVSLPARTFCEAMFQSLNLSAKDFKFGITKVFFRPGKFVEFDR 763
            .|..:......|||:.|   |.....| :.....:.:.|....:::|.|.||:|.|      |.:
Mouse   664 YRRKYEAFLQRYKSLCPETWPMWAGRP-QDGVAVLVRHLGYKPEEYKMGRTKIFIR------FPK 721

  Fly   764 IMRSDPENM----LAIVAKVK------KWLIRSRWVKSALGALCVIKL------RNRIIYRNKCV 812
            .:.:..:::    .::..|::      .|  |.::::....|:|:...      |.:...|....
Mouse   722 TLFATEDSLEVRRQSLATKIQAAWRGFHW--RQKFLRVKRSAICIQSWWRGTLGRRKAAKRKWAA 784

  Fly   813 LIAQRIARGFLARKQHRPRY-QGIGKINKIRTNTLKTIEIASGLKMGREEIISGVND-------- 868
            ...:|:.|||:.|  |.||. :....::.:|.:.|..:         |.::...|.|        
Mouse   785 QTIRRLIRGFILR--HSPRCPENAFFLDHVRASFLLNL---------RRQLPRNVLDTSWPTPPP 838

  Fly   869 IYRQIDDAIKKIKMNPRITQREMDSMYTVVMANMN-KLTVDLNTKLKEQQQAEEQERLRKIQEAL 932
            ..|:..:.::::                 .|.||. |....::.:.|:|.|          |:|:
Mouse   839 ALREASELLREL-----------------CMKNMVWKYCRSISPEWKQQLQ----------QKAV 876

  Fly   933 EAE--RAAKEAEEQRQREEIENKRLKAEMETRRKAAEAQRLRQE---------EEDRRAALALQE 986
            .:|  :..|:...|.......:.||..|..:.|   ..|.|..|         :.||:.......
Mouse   877 ASEIFKGKKDNYPQSVPRLFISTRLGTEEISPR---VLQSLGSEPIQYAVPVVKYDRKGYKPRPR 938

  Fly   987 QLEKEAK-----DDAKYRQQLE---------QERRDHELALRLANESNGQVED 1025
            ||.....     :|||.:|:::         ....|....|.:..|.|.|..|
Mouse   939 QLLLTPSAVVIVEDAKVKQRIDYANLTGISVSSLSDSLFVLHVQREDNKQKGD 991

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832 6/21 (29%)
Myosin_head 59..754 CDD:278492 262/720 (36%)
MYSc_Myo6 71..754 CDD:276833 259/704 (37%)
RILP-like <968..1015 CDD:304877 13/69 (19%)
Myosin-VI_CBD 1160..1246 CDD:293129
Myo1cNP_001357540.1 MYSc_Myo1 62..718 CDD:276829 258/703 (37%)
Actin-binding. /evidence=ECO:0000255|PROSITE-ProRule:PRU00782 608..630 10/21 (48%)
IQ 756..776 CDD:197470 3/19 (16%)
Myosin_TH1 874..1038 CDD:336273 25/121 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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