DRSC/TRiP Functional Genomics Resources

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Protein Alignment jar and hum-5

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_497809.1 Gene:hum-5 / 175521 WormBaseID:WBGene00002038 Length:1017 Species:Caenorhabditis elegans


Alignment Length:777 Identity:268/777 - (34%)
Similarity:411/777 - (52%) Gaps:67/777 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 HDDNC----ELMLLNE---ATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYN 116
            ||.|.    :|:||:.   .:.:.||:.|:.|.:||||:..:|:||||||:: .:|...|:.:|.
 Worm     6 HDPNGYGVEDLVLLSTIDLKSVVQNLQLRFQKGRIYTYIGEVLVAVNPYRQL-GIYEKSTVDQYK 69

  Fly   117 GRSLGELPPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHD--SAGPIE 179
            ||.:.|..||||||||.|.|.|:.:.....|::||||||||||::|.::|||....:  ..|.||
 Worm    70 GREIYERAPHVFAIADAAYRSMKRFGRDSCIVISGESGAGKTETSKIIMKYLAAITNVRQQGEIE 134

  Fly   180 ---TKILDANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAE 241
               ..:|.:|.:|||||.||||||:|||||||::.:::|.....|||.||:|||||||:..|...
 Worm   135 RVKNVLLRSNCILEAFGCAKTTRNDNSSRFGKYMHINFDYDGDPVGGNISNYLLEKSRVVRQQEG 199

  Fly   242 ERNYHVFYMLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLK 306
            |||:||||.|:.|....|..:..|.| |..:|      ||.|           :.::|      |
 Worm   200 ERNFHVFYQLVNGGDDGLLRQFGLTK-DAKQY------YFLN-----------QGQSH------K 240

  Fly   307 DPIIDDYQHFHNLDKALGRLGLSDTEKL-GIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQ 370
            ...|:|.:.|..:..||..:...|.:.: .::|::|.::||||:.|.: .::..|...::|  :.
 Worm   241 VASINDSRDFAEVQTALRSIHTFDKQDVESMWSVIAGLIHLGNVRFID-GENSSGAVHIAE--KA 302

  Fly   371 SLTITSGLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRI 435
            :|...:..|.|...||..:|.|:|:.:     .|.::.....:..|...|||||||:|.|||..:
 Worm   303 ALQNAARCLNVTPDELAKSLSSQVVAA-----HGDIVKKQHDVNAAYYTRDALAKALYERLFSWM 362

  Fly   436 VGLINQSIPFQASNFY-----IGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQEL 495
            |..:|::|..|.|:.|     ||||||.|||.|..|||||.||||||||||:.|.:.:||.|||.
 Worm   363 VSKVNEAISVQNSSRYSKSHVIGVLDIYGFEIFGTNSFEQLCINYCNEKLQQLFIELVLKQEQEE 427

  Fly   496 YKREGLNVPEITFTDNQDIIELIEAKSNGIFTLLDEE-SKLPKPSYSHFTAEVHKSWANHYRLGL 559
            |:|||:...:|.:.:|:.|.:|:|....||.::|||. :.:...:...|..|:.|...:|...  
 Worm   428 YEREGIKWVKIEYFNNKVICDLVEIPRTGILSILDEACASIGNVTDKVFLGELDKKLKSHKHY-- 490

  Fly   560 PRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSG 624
             .|..||........|.|.:.|:||.|.|:...|::||.|.|...|:.|:....|.|:::|||.|
 Worm   491 -TSRNLKQSDKSMGFEEFKITHYAGDVTYSVMGFMDKNKDTLFQDLKRLLYHSKNRLVKSLFPDG 554

  Fly   625 SSTSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGT 689
            |.:.........:.|..||..:.||:::|.|...::|||||||.:.....|:......|::..|.
 Worm   555 SKSMAEVNRRPPTAGFLFKNSMSELVKQLAQKEPHYIRCIKPNEEKNSNVFDLERVEHQVRYLGL 619

  Fly   690 ISVLELMEHGYPSRVLFADLYSMYK----SVLPPELVSLPARTFCEAMFQSLNLSAKDFKFGITK 750
            :..:.:...|:..|:.:....:.||    |..|........:..|..:.:|..| |:|...|.||
 Worm   620 LENVRVRRAGFAHRMPYDRFVNRYKLICASTWPNPRRGQQLKDSCMQILESAGL-AQDCVQGRTK 683

  Fly   751 VFFR-PGKFVEFDRIMRSDPENMLAIVAKVKKWL-IRSRW-----VKSALGALCVIKLRNRI 805
            :|.| |......:.:......|::..:.|:.:.: .|.|:     |:..:||....||::.|
 Worm   684 IFIRSPQTVFRLEELRTEQLPNVITFLQKMVRGVQQRERYRRMLAVRKIIGAYRRYKLKSYI 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 256/717 (36%)
MYSc_Myo6 71..754 CDD:276833 250/698 (36%)
RILP-like <968..1015 CDD:304877
Myosin-VI_CBD 1160..1246 CDD:293129
hum-5NP_497809.1 MYSc 6..699 CDD:214580 258/729 (35%)
MYSc_Myo1 26..687 CDD:276829 250/697 (36%)
Myosin_TH1 808..986 CDD:283635
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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