DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jar and hum-1

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_492393.1 Gene:hum-1 / 172698 WormBaseID:WBGene00002035 Length:1100 Species:Caenorhabditis elegans


Alignment Length:1133 Identity:328/1133 - (28%)
Similarity:508/1133 - (44%) Gaps:256/1133 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREI-----KELYAPDTIKKYNGRS 119
            ||...|..|.|.:.::|||.|...:.|:||:..:||:|||::::     ||:..      |.|.:
 Worm    17 DDMVLLPKLTEQSIVENLKKRLQANSIFTYIGPVLISVNPFKQMPYFTEKEMLL------YQGAA 75

  Fly   120 LGELPPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAG-----PIE 179
            ..|..||::|:||...|:|.:...||.:|:|||||||||.:.|:::.|:  |..|.|     .|:
 Worm    76 QYENAPHIYALADNMYRNMLIDNESQCVIISGESGAGKTVNAKFIMNYI--SRISGGGQKVQHIK 138

  Fly   180 TKILDANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERN 244
            ..||.:||:||||||:.|.||.|||||||::|:.:....:.:||.:|::||||||:..|:..:||
 Worm   139 DVILQSNPLLEAFGNSATVRNWNSSRFGKYVEIVFSRGGEPIGGKLSNFLLEKSRVVHQNEGDRN 203

  Fly   245 YHVFYMLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPI 309
            :||||.|.|||.:.||....:|:...|.||:                         ..|..|...
 Worm   204 FHVFYQLCAGADKNLRSTFGIGELQYYNYLN-------------------------MSGVFKADD 243

  Fly   310 IDDYQHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTI 374
            .||.:.|.:...|:..:|::|.::|.:..:||.|||:|||.|.|               |.:...
 Worm   244 TDDGKEFESTLHAMKVVGVNDQDQLEVLRIVATVLHIGNITFTE---------------ENNFAA 293

  Fly   375 TSG---------LLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSR 430
            .||         |||:...::...|..|.|:||.|..|..:.| .|.:.:||..|||..||||:|
 Worm   294 VSGKDYLEYPAFLLGLTSADIEAKLTGRKMESKWGTQKEEIDM-KLNVEQASYTRDAWVKAIYAR 357

  Fly   431 LFDRIVGLINQSIPF----QASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKN 491
            |||.:|..:|.::..    .:.||.:|:|||.|||.|..|.|||||||:.|||||:.|.:..||.
 Worm   358 LFDYLVKKVNDAMNITSQSTSDNFSVGILDIYGFEIFNNNGFEQFCINFVNEKLQQIFIELTLKA 422

  Fly   492 EQELYKREGLNVPEITFTDNQDIIELIEAK-SNGIFTLLDEESKLPKPSYSHFTAE--------- 546
            |||.|.|||:...||.:.||:.:.:|||.| ..||.:|||:..     :.:|...|         
 Worm   423 EQEEYVREGIKWTEIDYFDNKIVCDLIETKRPPGIMSLLDDTC-----AQNHGQREGVDRQLLTT 482

  Fly   547 VHKSWANHYRLGLPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQE 611
            :.||:|.|...| |.|            :.|:::|:||.|.||.:.|.::|.|.|:..|..|:|:
 Worm   483 LSKSFAGHPHFG-PGS------------DSFVIKHYAGDVTYNVDGFCDRNRDVLYPDLILLMQK 534

  Fly   612 CDNPLLQTLFPSGSSTSVRGKLNFISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFE 676
            ...|.:|.|||...:.|...:....|  :|.:||...|:|.|.:...:::||||||.......:|
 Worm   535 SSRPFIQALFPENVAASAGKRPTTFS--TKIRTQANTLVESLMKCSPHYVRCIKPNETKRPNDWE 597

  Fly   677 GSLALAQLKCSGTISVLELMEHGYPSRVLFADLYSMYKSVLPPELVSLPA-----RTFCEAMFQS 736
            .|....|::..|....:.:...|:..|..| |.::...:::.|:  :.|.     :..||.:..|
 Worm   598 ESRVKHQVEYLGLRENIRVRRAGFAYRRAF-DKFAQRYAIVSPQ--TWPCFQGDQQRACEIICDS 659

  Fly   737 LNLSAKDFKFGITKVFF------------RPGKFVEFDRIMRSDPENMLAIVAKVKKW---LIRS 786
            :::....::.|.||:|.            |..||..:.|:::             |.|   ..|.
 Worm   660 VHMEKNQYQMGKTKIFVKNPESLFLLEETRERKFDGYARVIQ-------------KAWRQFSARK 711

  Fly   787 RWVKSALGALCVI---KLRNRIIYRNKCVLIAQRIARGFLARKQHRPRYQG-IGK---------- 837
            :.:|....|..::   |.|.|.......|        |.....:|.|..|. :||          
 Worm   712 QHIKQKEQAADLMYGKKERRRYSLNRNFV--------GDYIGLEHHPTLQSLVGKRQRVLFACTA 768

  Fly   838 ---INKIRTNTLKTIEIASGLKM-GREEIISG------VNDIYRQID-DAIKKIKMNPRITQREM 891
               ..|.|...|..:...:.|.: |:|::.:|      |..|.||.| ..||.|.::|     ..
 Worm   769 NKYDRKFRVTKLDLLLTVNHLTLIGKEKVKNGPEKGKIVEVIKRQFDLPQIKSIGLSP-----YQ 828

  Fly   892 DSMYTVVMANMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEAERAAKEAE------EQRQREEI 950
            |....:.:.|     .|.::.|:...:.|....|.|         |.||..      :.|....:
 Worm   829 DDFVILYLGN-----DDYSSLLETPFKTEFCTALSK---------AYKERTNGTLHLDFRSSHVV 879

  Fly   951 ENKRLKAEMETRRKAAEAQRLRQEEEDRRAALALQEQLEKEAKDDAKY-------------RQQL 1002
            ..|::|.:.      ::.:|..|...|..::      .||..|.:.|.             |...
 Worm   880 SYKKMKFDF------SDGKRTVQFGNDGTSS------AEKTLKPNGKVLNVSIGTGLPNTTRPST 932

  Fly  1003 EQ------ERRDHELALRLA-------NESNGQVEDS----PPVIRNGVND-----ASPMGPNKL 1045
            |:      .|||.   ||.:       |:|.||...|    .||..:|:|:     .:|:..|. 
 Worm   933 ERPQGGYTPRRDQ---LRTSTRRTKQNNQSYGQNGQSQAMRAPVPAHGMNNNYNQTPAPVSTNH- 993

  Fly  1046 ISFSQ------VVSNIASRY--LNKSEN 1065
             .:||      |:.|:.::.  :|.|.|
 Worm   994 -QYSQEPARIPVMGNVINQLNNMNLSGN 1020

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 248/743 (33%)
MYSc_Myo6 71..754 CDD:276833 243/732 (33%)
RILP-like <968..1015 CDD:304877 13/65 (20%)
Myosin-VI_CBD 1160..1246 CDD:293129
hum-1NP_492393.1 MYSc 9..690 CDD:214580 248/744 (33%)
MYSc_Myo1 28..677 CDD:276829 243/720 (34%)
Myosin_TH1 717..902 CDD:283635 43/217 (20%)
Rubella_Capsid 906..>1003 CDD:283420 24/101 (24%)
SH3 1051..1100 CDD:302595
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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