DRSC/TRiP Functional Genomics Resources

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Protein Alignment jar and myo1h

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:XP_017945451.1 Gene:myo1h / 100492763 XenbaseID:XB-GENE-963784 Length:1036 Species:Xenopus tropicalis


Alignment Length:1074 Identity:323/1074 - (30%)
Similarity:496/1074 - (46%) Gaps:185/1074 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EGYIQGRITEIGAKEFEVTPTDRKYPKRTCHFDDIHSSCDGPQDHDDNCELMLLNEATFLDNLKT 79
            ||.:..| .::|.::|.:.              |.|:|                 ||.|:|||:.
 Frog    17 EGSLSAR-DKVGVQDFVLL--------------DSHTS-----------------EAAFMDNLRK 49

  Fly    80 RYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPHVFAIADKAIRDMRVYKLS 144
            |:.::.||||:..:|::||||:|: :||....::.|.|.:..|||||::|:||.|.|.|...:.:
 Frog    50 RFQENLIYTYIGTMLVSVNPYQEL-QLYTQRQMELYQGVNFIELPPHIYAVADNAYRVMCTERNN 113

  Fly   145 QSIIVSGESGAGKTESTKYLLKYL---CYSHDSAGPIETKILDANPVLEAFGNAKTTRNNNSSRF 206
            ..|::|||||:||||::|.:|:||   |...:....|..::|.:||||||||||||.||:|||||
 Frog   114 HFILISGESGSGKTETSKKILQYLAMTCPVTEKLQTIRDRLLLSNPVLEAFGNAKTIRNDNSSRF 178

  Fly   207 GKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAPQQLRDKLSLGK-PDD 270
            ||:::|.:|.|....||:|..||:||||:..|:..|||:|:||.||.|....|...|.|.: |..
 Frog   179 GKYMDVQFDYKGAPAGGHILSYLIEKSRVVHQNPGERNFHIFYQLLEGGEDHLIRWLGLERNPQM 243

  Fly   271 YRYL--SGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHNLDKALGRLGLSDTEK 333
            |.||  ..|      ||...                     |.|..::..:.:|...:..::.:.
 Frog   244 YSYLIQGEC------AKVSS---------------------ICDKTNWKLVRRAFTIIEFTEADI 281

  Fly   334 LGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLLGVDQTELRTALVSRVMQSK 398
            ..::.:||:|||||||.:||   |..|...:...|:  :...|.||||..:.|:.||.::.::: 
 Frog   282 EHLFGIVASVLHLGNIKYEE---DTHGHAIIRNGSQ--MQWISKLLGVPVSILQEALTNKKIEA- 340

  Fly   399 GGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIPFQ--ASNFYIGVLDIAGFE 461
                :...::.||.:..|..||||||||||.|.|:.:|..||.|:..:  .....||:|||.|||
 Frog   341 ----RSEEVLSPLNLELAYYARDALAKAIYGRSFNWLVNKINSSLANKDPPKKTVIGLLDIYGFE 401

  Fly   462 YFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDNQDIIELIEAKSNGIF 526
            .|..||||||||||||||||:.|....||.|||.|:.||:....:.:.||:.|.:|||.|..||.
 Frog   402 VFETNSFEQFCINYCNEKLQQLFISMTLKAEQEEYEIEGIEWEPVQYFDNKIICDLIEEKYKGII 466

  Fly   527 TLLDEESKLP-KPSYSHFTAEVHKSWANHYRLGLPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNT 590
            .::|||...| :.:...|.|::.:...:|......:.:...|.:|: |...|.:.|:||.|.|..
 Frog   467 AIMDEECLRPGEATDLSFLAKLEEKVGDHPHFLTRKLADPVARKTI-DWVDFRLIHYAGEVTYCA 530

  Fly   591 EQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSVRGKLNFISVGSKFKTQLGELMEKLEQ 655
            ..|:|||||.|:.:|:.:|.:..|.:|:..|   ..|.:..:....:|.::||..|..|:|.|..
 Frog   531 VGFLEKNNDLLYRNLKEVVLKSKNYILRDCF---HPTELDNRRRPETVTTQFKNSLSSLIEILLL 592

  Fly   656 NGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGYPSRVLFADLYSMYKSVLP-- 718
            ....:|||||||:.....:||..|...|:|..|.:..|.:...|:..|..:......|||:.|  
 Frog   593 KEPTYIRCIKPNNTKQPGKFEDMLVRHQVKYLGLMEHLRVRRAGFAYRRKYEIFLERYKSLCPQT 657

  Fly   719 -PELVSLPARTFCEAMFQSLNLSAKDFKFGITKVFFRPGKFVEFDRIMRSDPENMLAIVAKVKKW 782
             |.... |||...|.:.:.|.....::|.|.||:|.|      |.|          .:.|.|..:
 Frog   658 WPNWAG-PAREGVEKLVKYLGYQPNEYKLGRTKLFIR------FPR----------TLFATVDSF 705

  Fly   783 LIRSRWV--------KSALGALCVIKLRNRIIYRNKCVLIAQRIARGFLARKQHRPRYQGIGKIN 839
            .||...:        |..||.....|.:...|....|       .||.|||::.:.|...:..|.
 Frog   706 EIRKHQLVSKIQAKYKGCLGKRAFEKKKKAAIKLESC-------WRGVLARREAKKRAWAVQTIR 763

  Fly   840 KIRTNTLKTIEIASGLKMGREEIISGVNDIYRQIDDAIKK------------IKMNPRITQREMD 892
            |.                    |:..:|   |:..||...            .|:...:.:..:|
 Frog   764 KF--------------------IVGFIN---RKNPDADTNKNFFGMMYYNYLWKLREHVPKNVLD 805

  Fly   893 SMYTVVMANMNKLTVDLNTKL------KEQQQAEEQERLRKIQEAL---EAERAAKEAEEQRQRE 948
            ..:......|.| |.:|..||      ::..:....:|..::|:.:   :..:..||..:|...:
 Frog   806 KRWLTPPVAMEK-TSELLHKLCIRNLVRKYCRTITPQRTHQLQQKVVTSQIFKGKKEGYKQSLCQ 869

  Fly   949 EIENKRLKAEMETRRKAAEAQR-------LRQEEEDRRAALALQEQL-----EKEAKDDAKYRQQ 1001
            ..|..|| :|.:...|..:...       :...:.||....|...||     .....:.||.:|:
 Frog   870 PFEETRL-SEQDINPKVLQLMNYDRIKYGIAAVKYDRHGFKARPRQLLLTQSAAYVTEQAKIKQK 933

  Fly  1002 LE---------QERRDHELALRLANESNGQVEDS 1026
            :|         ....|..|.:.::.|.|.|..|:
 Frog   934 IEYSGLKGISVSNLNDGFLIIHVSPEDNKQKGDA 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832 5/29 (17%)
Myosin_head 59..754 CDD:278492 256/706 (36%)
MYSc_Myo6 71..754 CDD:276833 255/694 (37%)
RILP-like <968..1015 CDD:304877 11/67 (16%)
Myosin-VI_CBD 1160..1246 CDD:293129
myo1hXP_017945451.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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