DRSC/TRiP Functional Genomics Resources

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Protein Alignment jar and myo1c

DIOPT Version :9

Sequence 1:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster
Sequence 2:XP_002942189.2 Gene:myo1c / 100380193 XenbaseID:XB-GENE-1009886 Length:1044 Species:Xenopus tropicalis


Alignment Length:1107 Identity:333/1107 - (30%)
Similarity:537/1107 - (48%) Gaps:177/1107 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AAEGYIQG-RITEIGAKEFEVTPTDRKYPKRTCHFDDIHSSCDGPQDHDDNCELMLL----NEAT 72
            ||...|.| |:|    .|..:|..||.                |.||      .:||    :||.
 Frog     5 AAAPAIDGIRVT----MESALTARDRV----------------GVQD------FVLLENYTSEAA 43

  Fly    73 FLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPHVFAIADKAIRD 137
            |::||:.|:.::.||||:.::|::||||:|: |:|:...:::|.|.|..|:.||::||||.:.|.
 Frog    44 FIENLRKRFKENLIYTYIGSVLVSVNPYKEL-EIYSKQHMERYRGVSFYEVSPHIYAIADNSYRS 107

  Fly   138 MRVYKLSQSIIVSGESGAGKTESTKYLLKY---LCYSHDSAGPIETKILDANPVLEAFGNAKTTR 199
            :|..:..|.|::|||||:||||::|.:|:|   .|.:.|....::.::|.:||||||||||||.|
 Frog   108 LRTERKDQCILISGESGSGKTEASKKILQYYAVTCPASDQVETVKDRLLQSNPVLEAFGNAKTLR 172

  Fly   200 NNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAPQQLRDKLS 264
            |:|||||||:::|.:|.|...|||:|.:|||||||:..|:..|||:|:||.||.|..:.|..:|.
 Frog   173 NDNSSRFGKYMDVQFDYKGAPVGGHILNYLLEKSRVVHQNHGERNFHIFYQLLEGGEEDLLRRLG 237

  Fly   265 LGK-PDDYRYL--SGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHNLDKALGRL 326
            |.| ..:|:||  ..|.:..:                           |:|...:..:.:||..:
 Frog   238 LDKNAQNYQYLVKGQCARVSS---------------------------INDKNDWKIVRRALSII 275

  Fly   327 GLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSGLLGVDQTELRTALV 391
            ..::.:...:.|:||:||||||:.|   ..|..|..||:  :|..:...:.||.||...||.:|:
 Frog   276 NFNEDDVEELLSVVASVLHLGNVQF---ASDDHGHAQVT--TENQIKYLARLLAVDAAALRESLI 335

  Fly   392 SRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIPFQASNF------ 450
            .:.:.:||.....     ||.:.:|:.||||||||||.|.|..:|..||:|:.::.|:.      
 Frog   336 HKKIIAKGEELNS-----PLNLEQAAYARDALAKAIYGRTFSWLVSKINKSLAYKGSDVLSIGNA 395

  Fly   451 -YIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVPEITFTDNQDI 514
             .||:|||.|||.|..||||||||||||||||:.|.:..||:|||.|:.||:....:.:.:|:.|
 Frog   396 SVIGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEEYESEGIAWESVQYFNNKII 460

  Fly   515 IELIEAKSNGIFTLLDEESKLP-KPSYSHFTAEVHKSWANHYRLGLPRSSRLKAHRTL-RDEEGF 577
            .:|:|.|..||.::||||...| :.:...|..::..:..||......:....|..::| |||  |
 Frog   461 CDLVEEKFKGIISILDEECLRPGEATDMTFLEKLEDTVKNHPHFVTHKLGDQKLRKSLGRDE--F 523

  Fly   578 LVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSVRGKLNFISVGSKF 642
            .:.|:||.|.|:...|::||||.|..:|:.::.:..||:....|.....|.   |....:|.::|
 Frog   524 RLLHYAGEVNYSVVGFLDKNNDLLFRNLKEVMCDSGNPIAHQCFDRAELTD---KKRPETVATQF 585

  Fly   643 KTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGYPSRVLFA 707
            |..|.:|||.|.....:::||||||......:|:..|...|:|..|.|..:.:...|:..|..:.
 Frog   586 KNSLSKLMEILMSKEPSYVRCIKPNDAKQAARFDEVLIRHQVKYLGLIENVRVRRAGFAYRRKYE 650

  Fly   708 DLYSMYKSVLPPELVSLPART--FCEAMFQSLNLSAKDFKFGITKVFFRPGK--FVEFDRIMRSD 768
            .....|||:.|....:...|.  ....:.:||....:::|.|.||:|.|..|  |...|.:    
 Frog   651 IFLQRYKSLCPETWPNWDGRAQDGVAVLVKSLGYKPEEYKMGRTKIFIRFPKTLFATEDAL---- 711

  Fly   769 PENMLAIVAKVKKWLIRSRWVKSALGALCVIKLRNRIIYRNKCVLIAQRIARGFLARKQHRPRYQ 833
            .|...:|..     .:::|| |..:       .|.:.::.....:..|...||.:.||:...|..
 Frog   712 EERKQSIAT-----FLQARW-KGFV-------QRKKFLHMKHSAIHIQSWWRGNVGRKKAAKRKW 763

  Fly   834 GIGKINKIRTNTLKTIEIASGLKMGREEIISGVNDIYRQIDDAIKKIKMNPRITQRE--MDSM-Y 895
            .:..:.:                     .|.|.  :||..          ||..:.|  :|.: |
 Frog   764 AVEVVRR---------------------FIKGF--VYRNY----------PRCPENEYFLDYIRY 795

  Fly   896 TVVM---ANMNKLTVDLNTKLKEQQQAEEQERLRKI----QEALEAERAAKEAEEQRQREEIENK 953
            :.:|   .||.|..:|.:..:......|..|.||::    ...:...|.:.|.::|.:::.:.::
 Frog   796 SFLMNLRRNMPKSVLDKSWPVPPPSLQEASELLREMCMDNMVWMYCRRISPEMKQQLEQKVVASE 860

  Fly   954 RLKAEMETRRKAAE----AQRLRQEEEDRRAALALQEQLEKEAKDDAKY-RQQLEQERRDHELAL 1013
            ..|.:.:...::..    :.||..||.:.:....::.|....|....|| |:..:..||.    |
 Frog   861 IFKDKKDNYPQSVPRLFISTRLGNEEINTKILQNMENQTLTYAVPVVKYDRKGYKPRRRQ----L 921

  Fly  1014 RLANESNGQVEDSPPVIRNGVNDASPMGPNKLISFSQVVSNIASRYLNKSENVRAQQQALGKQKY 1078
            .|...:...||::.  ::..::.|:..|    ||.|.:..|:...::...:|         |||.
 Frog   922 LLTQNAAYIVEEAK--LKQRIDYANLTG----ISVSSLSDNLFVLHVKCEDN---------KQKG 971

  Fly  1079 DL 1080
            |:
 Frog   972 DV 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jarNP_001014650.2 Myosin_N 7..45 CDD:280832 10/32 (31%)
Myosin_head 59..754 CDD:278492 256/715 (36%)
MYSc_Myo6 71..754 CDD:276833 253/699 (36%)
RILP-like <968..1015 CDD:304877 12/47 (26%)
Myosin-VI_CBD 1160..1246 CDD:293129
myo1cXP_002942189.2 MYSc_Myo1 43..699 CDD:276829 252/698 (36%)
Myosin_TH1 855..1036 CDD:368706 27/138 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122881at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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