DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-PheRS and Farsb

DIOPT Version :9

Sequence 1:NP_651237.1 Gene:beta-PheRS / 42888 FlyBaseID:FBgn0039175 Length:589 Species:Drosophila melanogaster
Sequence 2:XP_036020538.1 Gene:Farsb / 23874 MGIID:1346035 Length:595 Species:Mus musculus


Alignment Length:573 Identity:354/573 - (61%)
Similarity:432/573 - (75%) Gaps:8/573 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DDEFQDLCFAFGLELDEVTTEKQMLTKEQGDVAAAANASEEIIYRIDIPANRYDLLCLEGLVTGL 85
            |:||.:|||.|||||||:|:|||:::||||. ..|..||:.::|:||:|||||||||||||..||
Mouse    27 DEEFDELCFEFGLELDEITSEKQIISKEQGH-GKAQGASDVVLYKIDVPANRYDLLCLEGLARGL 90

  Fly    86 LVFQGKLKPPKFQFVELAKRQVLK--IDPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQ 148
            .||:.::|.|.::.| :.|..:.|  |...||::||:||||||||:.||:..|:|||:||:||||
Mouse    91 QVFKERIKAPVYKRV-MPKGDIQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQ 154

  Fly   149 NICRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDFYSTHAQLKQYLPI 213
            ||||||.||||||||||||.|||:|.|..|..|||||||:|||.|..|||:.|.|...||.||.|
Mouse   155 NICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHI 219

  Fly   214 IRESPVYPVIYDANRVVLSLPPIINGDHSKITLKTKNVFIECTATDRTKAKVVLDTIVCLFSEHC 278
            |...|:||||||:|.||||:||||||:|||||:.|:|:|||||.||.||||:|||.||.:|||||
Mouse   220 IESKPLYPVIYDSNGVVLSMPPIINGNHSKITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEHC 284

  Fly   279 AQKFTVEPCDVVQPDGSVISYPELEVREERISVKRANAYIGIDEPAEKLADMLTRMYLEAKV--D 341
            ..:||||..:||.|:|...::|||..|:|.:.....|..:||.|....||.:||||.|:::|  |
Mouse   285 ENQFTVEAVEVVSPNGKSSTFPELPYRKEMVRADLINKKVGIRETPANLAKLLTRMCLKSEVIGD 349

  Fly   342 GDSLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLREQVAQAG 406
            |:.:.|:|||||.||||||||.||.|||||||||:.:||....||.|||||||||.||..:|.||
Mouse   350 GNQIEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAAAG 414

  Fly   407 FTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTTLLPGLLKTLVANRKMPLPLK 471
            |||||||.|||::||..||..:|.|..||||.||||.||||.|||||||||||:.||||||||||
Mouse   415 FTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 479

  Fly   472 LFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVVHGLLDRVMQLLSVPWKSASGTKGYYLQ 536
            |||||||||.|...:|||:|.|.:|||..|||.|||::||||||:||||.||....||  ||.::
Mouse   480 LFEISDVVVKDSGKDVGAKNYRHLCAVYYNKTPGFEIIHGLLDRIMQLLDVPPGEESG--GYMIK 542

  Fly   537 ATEDPSYFPGRCANVMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPFV 589
            |:...::||||||.:...|..|||:|||||.|:..||||.|||::|..||||:
Mouse   543 ASAGSAFFPGRCAEIFVGGQSIGKLGVLHPDVITKFELTMPCSSLEINIEPFL 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-PheRSNP_651237.1 PLN02265 1..589 CDD:215149 353/571 (62%)
B3_4 118..279 CDD:214876 113/160 (71%)
B5 310..372 CDD:281482 34/63 (54%)
PheRS_beta_core 390..588 CDD:238392 128/197 (65%)
FarsbXP_036020538.1 PLN02265 27..595 CDD:215149 353/571 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849162
Domainoid 1 1.000 261 1.000 Domainoid score I1952
eggNOG 1 0.900 - - E1_COG0072
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4160
Inparanoid 1 1.050 731 1.000 Inparanoid score I611
Isobase 1 0.950 - 0 Normalized mean entropy S494
OMA 1 1.010 - - QHG62210
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004315
OrthoInspector 1 1.000 - - oto92188
orthoMCL 1 0.900 - - OOG6_101233
Panther 1 1.100 - - LDO PTHR10947
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1438
SonicParanoid 1 1.000 - - X3585
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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