DRSC/TRiP Functional Genomics Resources

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Protein Alignment beta-PheRS and fars-3

DIOPT Version :9

Sequence 1:NP_651237.1 Gene:beta-PheRS / 42888 FlyBaseID:FBgn0039175 Length:589 Species:Drosophila melanogaster
Sequence 2:NP_495785.1 Gene:fars-3 / 174351 WormBaseID:WBGene00001498 Length:591 Species:Caenorhabditis elegans


Alignment Length:595 Identity:341/595 - (57%)
Similarity:441/595 - (74%) Gaps:10/595 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPTIGVKRDLLFEALGKTYTDDEFQDLCFAFGLELDEVTTEKQMLTKEQGDVAAAANASEEIIYR 65
            |||:|:|:.:|.:...:.|::.||.:|||.:||||||:|:||..:.|||| ..||::.:::.:|:
 Worm     1 MPTVGIKKVILDKHFKRVYSEKEFDELCFEYGLELDEITSEKAAVEKEQG-TRAASDLNDQEVYK 64

  Fly    66 IDIPANRYDLLCLEGLVTGLLVFQGKLKPPKFQFVELAKRQVLKI--DPSTAQIRPYAVAAVLRN 128
            |||||||||||.:|||...:.:|:.::..|.:::.::.|..:.||  ...|||:||:.|.||||:
 Worm    65 IDIPANRYDLLSVEGLARAIRIFKQEIPSPAYKYADVPKTGLQKIIVKKETAQVRPFVVGAVLRD 129

  Fly   129 VTFTQASYNSFIDLQDKLHQNICRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMT 193
            ::|...||.|||||||||||||||||||||||||||||:||||.|.|.||..|||||||||||.|
 Worm   130 ISFDADSYASFIDLQDKLHQNICRKRTLVAIGTHDLDTIQGPFEYRAEAPKDIKFKPLNQTKEYT 194

  Fly   194 GSELMDFYSTHAQLKQYLPIIRESPVYPVIYDANRVVLSLPPIINGDHSKITLKTKNVFIECTAT 258
            ..|||..|||.:.||.|||||:..||||||||.|.||.|:||||||:||||||.|||||||.|||
 Worm   195 AEELMTLYSTDSHLKAYLPIIQNHPVYPVIYDKNGVVCSMPPIINGEHSKITLNTKNVFIEATAT 259

  Fly   259 DRTKAKVVLDTIVCLFSEHCAQKFTVEPCDVVQPDGSVIS-YPELEVREERISVKRANAYIGIDE 322
            |:.||.|||||||.|||::||:.||:|..:||..:..|.. ||.|..||..::....|..|||:.
 Worm   260 DKQKAFVVLDTIVTLFSQYCAKPFTIEQVEVVYEETGVKELYPLLSYREMTVTTPEINTKIGINL 324

  Fly   323 PAEKLADMLTRMYLEAKVDG-DSLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIA 386
            ..|::|.:|.:|.|:|:|.. ::|.:.:||||||::|||||.|||.:|:||||:...||....:|
 Worm   325 KDEEMATLLNKMSLKAEVAAKETLKIVVPPTRHDILHACDIAEDVGVAFGYNNLITKLPESNTVA 389

  Fly   387 KQFPLNKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALP-AVHIGNPKTLEFQVVRT 450
            ..||:|||.:.||.::|.||:||||.|.|||||||..|| :..|||. ||||||||||||||.||
 Worm   390 VAFPINKLCDNLRIEIAAAGWTEALNFALCSRDDISSKL-RQPDALSHAVHIGNPKTLEFQVART 453

  Fly   451 TLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVVHGLLDR 515
            :|||||||||.:||.|||||||||:.||:|.|.:|:||||||||:.||..|:.||||::.|.|||
 Worm   454 SLLPGLLKTLSSNRDMPLPLKLFELQDVIVKDSNTDVGARNERRLAAVYYNRAAGFEIIQGFLDR 518

  Fly   516 VMQLLSVPWKSASGTKGYYLQATEDPSYFPGRCANVM-YDGVVIGKIGVLHPTVLQAFELTTPCS 579
            :|::|:|. .:..|| |||::|.|:.:|||||||.:: ..|||:|.||.|||.|:.:|.||.||.
 Worm   519 IMRMLNVN-PARDGT-GYYIEADENSTYFPGRCAKIIGPKGVVLGHIGALHPEVITSFGLTLPCG 581

  Fly   580 AVEFTIEPFV 589
            |||..:|||:
 Worm   582 AVEINVEPFL 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-PheRSNP_651237.1 PLN02265 1..589 CDD:215149 340/593 (57%)
B3_4 118..279 CDD:214876 119/160 (74%)
B5 310..372 CDD:281482 27/62 (44%)
PheRS_beta_core 390..588 CDD:238392 122/199 (61%)
fars-3NP_495785.1 PLN02265 1..591 CDD:215149 340/593 (57%)
B3_4 119..280 CDD:214876 119/160 (74%)
B5 315..375 CDD:281482 27/59 (46%)
PheRS_beta_core 393..590 CDD:238392 122/199 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166298
Domainoid 1 1.000 243 1.000 Domainoid score I1229
eggNOG 1 0.900 - - E1_COG0072
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4160
Inparanoid 1 1.050 664 1.000 Inparanoid score I393
Isobase 1 0.950 - 0 Normalized mean entropy S494
OMA 1 1.010 - - QHG62210
OrthoDB 1 1.010 - - D378921at2759
OrthoFinder 1 1.000 - - FOG0004315
OrthoInspector 1 1.000 - - oto19643
orthoMCL 1 0.900 - - OOG6_101233
Panther 1 1.100 - - LDO PTHR10947
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1438
SonicParanoid 1 1.000 - - X3585
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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