DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spps and sp2

DIOPT Version :9

Sequence 1:NP_001262902.1 Gene:Spps / 42882 FlyBaseID:FBgn0039169 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001093452.2 Gene:sp2 / 556835 ZFINID:ZDB-GENE-080410-1 Length:610 Species:Danio rerio


Alignment Length:622 Identity:196/622 - (31%)
Similarity:268/622 - (43%) Gaps:155/622 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 PAPAMPQQQQTVA--------VQIP--VQTANGQTIYQTVHVPVQAAATSSGGLQ-----NLMQA 327
            |||..|...:.:.        :|:|  :.::....|..|...|.:.|.||:...|     ....:
Zfish    71 PAPIAPAPPKNLGFLSAKGNIIQLPAGLGSSGASPIVFTFQSPSRPAGTSTANFQYQVIPQFQGS 135

  Fly   328 QSLQ-MPSASQMQIIPQFSQIAQIVTPNGQIQQVQLAMPYPQLPPNANIIHIQNPHQQQQQQVQQ 391
            |::| ||...|:||||..:| |.|.:|      |.:....|..||.|       |....|.:...
Zfish   136 QTIQMMPQGGQIQIIPGTNQ-AIITSP------VTVQAATPTAPPLA-------PAPVPQHKTVA 186

  Fly   392 QQQQQQAQQQQQAQQQQAQQQQQQQVQAQHQQLLQAISDASAGGQLPPNQPITITNAQGQQL--T 454
            .:...|.::|..|           .|.|...:|       .:|..||.|  :|..:..|.|:  .
Zfish   187 IKPSTQKRRQNNA-----------SVNANIVRL-------PSGLTLPLN--VTTGDVGGAQVLTE 231

  Fly   455 VIPAQLRPN-------APTAPTPAPAGVPTPMQMPNLQALPIQ----NIPGLGQVQIIHANQLPP 508
            ...|.::|.       |..||.|||.....|.....::||.|:    ||...|...:|..|    
Zfish   232 TAAAPVKPKRGRKRQVAIAAPAPAPQPASPPPVAEQVEALLIETTADNIIQAGNNLLIVQN---- 292

  Fly   509 NLPANFQQVLTQLPMSHPQVQTQGQVQVMPKQEPQSPTQMITSIKQEPPDTFGPISATGN--PPA 571
              |...|..:.|            |||::.::..|...|:       ||.....:.|...  ||.
Zfish   293 --PGGSQPAVVQ------------QVQLLQQKSDQQVVQI-------PPQALKVVQAASATLPPV 336

  Fly   572 P---ASTPNT-ASPQQQQIKFLHTESNSLSSLSIPASIQITALPQQAT-NTPNTPATTQPIPVSL 631
            |   ..||:. .||.:.....:.|.|....::.|          |:.| .||.||.:| |.|   
Zfish   337 PQRQTVTPSVQVSPPEPTQVLIKTASGEWQAVQI----------QETTVTTPTTPTST-PTP--- 387

  Fly   632 PARSKVNAVTTSSTQI---------TIAPTGGQVVSV-TTQARGATASIRSTNTS-------TTT 679
                   ||.|...|.         .|||.||.:::: ..|...|..::::.|.:       ..|
Zfish   388 -------AVVTKKVQTGTRKERTLPKIAPAGGGLITLNAAQLASAAQAVQTININGVQVQGVPVT 445

  Fly   680 ITTP-SQSHLNMNISVASVGGAATGGGGGTAT----------------GEPKPRLKRVACTCPNC 727
            ||.. .|.||.:. :|.|.|  ...|...|.|                .:|..:.:|:|||||||
Zfish   446 ITNAGGQQHLTVQ-TVPSAG--LQLGSVQTQTQTMQIEQTQTLALELQTQPGEKKRRMACTCPNC 507

  Fly   728 TDGEKHSDK--KRQHICHITGCHKVYGKTSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRH 790
            .|.||...:  ||:|||||.||.|.:.|||.||||:|.|||||||||:|.|||||||||||||||
Zfish   508 KDAEKKPGEVGKRKHICHIAGCEKTFRKTSLLRAHVRLHTGERPFVCNWVFCGKRFTRSDELQRH 572

  Fly   791 RRTHTGEKRFQCQECNKKFMRSDHLSKHIKTHFKSRS 827
            .|||||:|||:|.:|.|:|||||||:||.|||..::|
Zfish   573 ARTHTGDKRFECNKCQKRFMRSDHLTKHYKTHINTKS 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SppsNP_001262902.1 COG5048 <725..827 CDD:227381 72/103 (70%)
C2H2 Zn finger 742..764 CDD:275368 14/21 (67%)
zf-H2C2_2 756..783 CDD:290200 21/26 (81%)
C2H2 Zn finger 772..794 CDD:275368 18/21 (86%)
zf-H2C2_2 786..809 CDD:290200 16/22 (73%)
zf-C2H2 800..822 CDD:278523 14/21 (67%)
C2H2 Zn finger 802..822 CDD:275368 13/19 (68%)
sp2NP_001093452.2 C2H2 Zn finger 524..546 CDD:275368 14/21 (67%)
COG5048 <529..>584 CDD:227381 43/54 (80%)
zf-H2C2_2 539..565 CDD:290200 21/25 (84%)
C2H2 Zn finger 554..576 CDD:275368 18/21 (86%)
zf-H2C2_2 568..591 CDD:290200 16/22 (73%)
zf-C2H2 582..604 CDD:278523 14/21 (67%)
C2H2 Zn finger 584..604 CDD:275368 13/19 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I10112
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3346
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1085860at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.070

Return to query results.
Submit another query.