DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spps and sp1

DIOPT Version :9

Sequence 1:NP_001262902.1 Gene:Spps / 42882 FlyBaseID:FBgn0039169 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_997827.2 Gene:sp1 / 324109 ZFINID:ZDB-GENE-030131-2829 Length:594 Species:Danio rerio


Alignment Length:763 Identity:221/763 - (28%)
Similarity:308/763 - (40%) Gaps:202/763 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 VTNLIQQQQQAQQVHQGTVQQQAQGTNASGANGSGVTNSGTAGQLPGSITIPGTNLQIPTSVAAA 241
            :::|.::::.|........|:.:...:..|......::|....|.|..:.:              
Zfish     1 MSDLKKREKLAPSHRMSDPQKSSMADSEPGFPQKSSSSSAQDSQQPSPLAL-------------- 51

  Fly   242 NGLLGNISNISNLLGGGQSIKLENGQLQMRPQLVQFPAPAMPQQQQTVAVQIPVQTANGQTIYQT 306
              |....|.|.           |||             .|.||.:|...:::| |..||.     
Zfish    52 --LAATCSRID-----------ENG-------------AAEPQTRQDSQLELP-QGTNGW----- 84

  Fly   307 VHVPVQAAATSSGGLQNLMQAQSLQMPSASQMQIIPQFSQIAQIVTPNGQIQQVQLAMPYPQLPP 371
             |:......|.:.....:..|.|.:...|:...|.|||...|         |..||....|.:.|
Zfish    85 -HISPAGTQTPTSAPAAVPTAPSEERSRAATATIQPQFLMPA---------QSQQLLTALPGVMP 139

  Fly   372 NANIIHIQNPHQQQQQQVQQQQQQQQAQQQQQAQQQQAQQQQQQQVQAQHQQLLQAISDASAGGQ 436
            |.            |.||..|.|....||.|                      |||..|.|  ||
Zfish   140 NI------------QYQVIPQFQTVDGQQLQ----------------------LQAAQDMS--GQ 168

  Fly   437 LPPNQPITITNAQGQQLTVIPAQLRPNAPTAPTPAPAGVPTPMQMPNL--QALPIQNIPGLGQVQ 499
            |      .:::..||||..                 ||....:.:|.|  ||:|:||:..:    
Zfish   169 L------LVSSPGGQQLRA-----------------AGSGNILTVPGLFQQAIPLQNLSAV---- 206

  Fly   500 IIHANQLPPNLPANFQQVLTQLPMSHPQVQTQGQVQVMPKQEPQSPTQMITSIKQEPPDTFGPIS 564
            :.:..|...|:|.|..  :|.||:....|  .|.........||.|....|:.........| |:
Zfish   207 LPNQTQFLANVPLNAN--ITLLPVGPGPV--GGDTHTAVAAPPQGPEFCSTASSTRATAAVG-IA 266

  Fly   565 ATGNPPAPASTPNTASPQQQQIKFLHTESNSLSSLSIPASIQIT-ALPQQATNTP--NTPATTQP 626
            ......|||::.......|..::.:..     .::|.|..:..| .|.|......  .|.|:..|
Zfish   267 TLAQSRAPAASDGQKGQPQMLLQGVQQ-----GAVSAPGPVFTTQTLSQDGVQNVQIQTIASGSP 326

  Fly   627 IPV-SLPARSKVNAVT----TSSTQITIAPTGGQVVSVTTQARGATASIRSTNTSTTTITTPSQS 686
            |.: :|.|..:|:..|    :...|||:|||            ||:..::.:...|..:.|....
Zfish   327 ILIRTLGADGQVSWQTLQLQSPGAQITLAPT------------GASGPVQLSGLQTINLNTLGSG 379

  Fly   687 HLNMN-----ISVASVGGAATG--------------GGGGTATGEPKPRLKRVACTCPNCTDGE- 731
            .|.|.     :::||..|.|..              ....||:..   |.:|.|||||.|.||| 
Zfish   380 GLQMQPIQMPVTIASAPGEAAADALEDSAVLEENAESSPNTASSR---RTRREACTCPYCKDGEG 441

  Fly   732 KHSDKKRQHICHITGCHKVYGKTSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHTG 796
            :...||:||||||.||.||||||||||||||||||||||||||:|||||||||||||||:|||||
Zfish   442 RDPSKKKQHICHIPGCGKVYGKTSHLRAHLRWHTGERPFVCSWSFCGKRFTRSDELQRHKRTHTG 506

  Fly   797 EKRFQCQECNKKFMRSDHLSKHIKTHFKSRSGVELIELSIKQETKGGNA-PKSISTVNGIVTIEI 860
            ||:|.|.||.|:||||||||||||||...:..|......:   |...:| |:::.||:       
Zfish   507 EKKFSCTECPKRFMRSDHLSKHIKTHLNKKVCVSACSDPV---TPAADADPQTLLTVD------- 561

  Fly   861 PGGGSAAAGSGASSVAATVAGSTVTPGGATIVQLPTVEASG--GGDSF 906
                |.:|.|           .|..|||.:::|:..:::.|  |.:.|
Zfish   562 ----SLSADS-----------FTRLPGGISVMQVTDLQSIGLSGSNGF 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SppsNP_001262902.1 COG5048 <725..827 CDD:227381 82/102 (80%)
C2H2 Zn finger 742..764 CDD:275368 19/21 (90%)
zf-H2C2_2 756..783 CDD:290200 25/26 (96%)
C2H2 Zn finger 772..794 CDD:275368 19/21 (90%)
zf-H2C2_2 786..809 CDD:290200 17/22 (77%)
zf-C2H2 800..822 CDD:278523 17/21 (81%)
C2H2 Zn finger 802..822 CDD:275368 16/19 (84%)
sp1NP_997827.2 C2H2 Zn finger 452..474 CDD:275368 19/21 (90%)
COG5048 <465..547 CDD:227381 62/84 (74%)
zf-H2C2_2 466..493 CDD:290200 25/26 (96%)
C2H2 Zn finger 482..504 CDD:275368 19/21 (90%)
zf-H2C2_2 496..519 CDD:290200 17/22 (77%)
zf-C2H2 510..532 CDD:278523 17/21 (81%)
C2H2 Zn finger 512..532 CDD:275368 16/19 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586192
Domainoid 1 1.000 64 1.000 Domainoid score I10112
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3346
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1085860at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24772
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6780
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.030

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