DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spps and Sp5

DIOPT Version :9

Sequence 1:NP_001262902.1 Gene:Spps / 42882 FlyBaseID:FBgn0039169 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001100022.1 Gene:Sp5 / 296510 RGDID:1308499 Length:398 Species:Rattus norvegicus


Alignment Length:411 Identity:140/411 - (34%)
Similarity:185/411 - (45%) Gaps:82/411 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   462 PNAPTAPTPAPAGVPTPMQMPNLQALPIQNIPGLGQVQIIHANQLPPNLPANFQQVLTQLPMSHP 526
            |.|..|.|.:..|.|.....|:...:|..  |.||.         |..|   |......:|...|
  Rat    32 PLALLAATCSRIGQPGAAAAPDFLQVPYD--PALGS---------PSRL---FHPWTADMPAHSP 82

  Fly   527 QVQTQGQVQVMPKQEPQSPTQMITSIKQEPPDTFG-----PISATGNPPAPASTPNTASPQQQQI 586
                    ..:|   |..|:..:|..|.....:||     |::    |||..|.|...||    :
  Rat    83 --------GALP---PPHPSLGLTPQKTHLQPSFGAAHELPLT----PPADPSYPYEFSP----V 128

  Fly   587 KFLHTESNSLSSLSIPASIQI---TALPQQATNTPNTPATTQPIPVSLPARSKVNAVTTSSTQIT 648
            |.|.:...:|.:...||.:..   .|||...:|....|....|.|              :..|::
  Rat   129 KMLPSSMAALPASCAPAYVPYAAQAALPPGYSNLLPPPPPPPPPP--------------TCRQLS 179

  Fly   649 IAPTGGQVVSVTTQARGA---TASIRSTNTSTTTITTPSQSHLNMNISVASVGGAATGGG---GG 707
            .||....:...:....||   ::.:..|:.|:.....|.......:.:.|:...||...|   |.
  Rat   180 PAPAPDDLPWWSIPQSGAGPGSSGVPGTSLSSACAGPPHAPRFPASAAAAAAAAAALQRGLVLGP 244

  Fly   708 T----------ATGEPKPRLKRVA-----CTCPNCTDG----EKHSDKKRQHICHITGCHKVYGK 753
            :          |..:.|..|...|     |.||||...    |....||:||:||:.||.|||||
  Rat   245 SDFAQYQSQIAALLQTKAPLAATARRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGKVYGK 309

  Fly   754 TSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHTGEKRFQCQECNKKFMRSDHLSKH 818
            ||||:||||||||||||||:|.||||.||||||||||.|||||||||.|.||.|:|||||||:||
  Rat   310 TSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRFACPECGKRFMRSDHLAKH 374

  Fly   819 IKTHFKSRSGVELIELSIKQE 839
            :|||...:  :::.|..:|:|
  Rat   375 VKTHQNKK--LKVAEAGVKRE 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SppsNP_001262902.1 COG5048 <725..827 CDD:227381 75/105 (71%)
C2H2 Zn finger 742..764 CDD:275368 17/21 (81%)
zf-H2C2_2 756..783 CDD:290200 22/26 (85%)
C2H2 Zn finger 772..794 CDD:275368 17/21 (81%)
zf-H2C2_2 786..809 CDD:290200 18/22 (82%)
zf-C2H2 800..822 CDD:278523 15/21 (71%)
C2H2 Zn finger 802..822 CDD:275368 14/19 (74%)
Sp5NP_001100022.1 SP1-4_N 31..>47 CDD:425404 5/14 (36%)
SP5_N 106..297 CDD:412096 47/212 (22%)
C2H2 Zn finger 301..320 CDD:275368 15/18 (83%)
COG5048 <311..384 CDD:227381 57/74 (77%)
C2H2 Zn finger 328..350 CDD:275368 17/21 (81%)
zf-H2C2_2 342..365 CDD:404364 18/22 (82%)
C2H2 Zn finger 358..378 CDD:275368 14/19 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1085860at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46128
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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