DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment twin and AT1G73875

DIOPT Version :10

Sequence 1:NP_732964.1 Gene:twin / 42880 FlyBaseID:FBgn0011725 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_683491.2 Gene:AT1G73875 / 843724 AraportID:AT1G73875 Length:454 Species:Arabidopsis thaliana


Alignment Length:477 Identity:115/477 - (24%)
Similarity:181/477 - (37%) Gaps:132/477 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 NPLQKEFMNIYNEPNGTQKLLTYMLDNLSFT---------------------------VNPPPQR 190
            |.:.::..|:|.:.|..:.:.  :..:.|||                           ::...:|
plant    22 NSISEQSENVYEKSNRKESIT--LKPHRSFTPGFSQRDCKPVRHSKSSLRRRRRTKEKISSSVER 84

  Fly   191 PWLPLAKPNKTRPACIFTVMCYNVLCDKYATRQM--YGYCPSWALCWEYRKKSIIDEIRHYAADI 253
            .|: .:..|....|....::.||:|....|:..|  |...|...|.|..||..|..||..|.|.|
plant    85 EWV-FSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASI 148

  Fly   254 ISLQEIETEQFYHFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLI 318
            :.|||::........   |||.|:.|:.  |||....|       ||||||::.:.|.|:....|
plant   149 LCLQEVDRFDDLDVL---LKNRGFRGVH--KSRTGEAS-------DGCAIFWKENLFELLDHQHI 201

  Fly   319 EFNQLAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWE-PMSEV-TQISQP--LLVCTAHIHW 379
            ||::..|.|                 .:|.|..::.|..| |.|:: .:.|.|  |:|...|:.:
plant   202 EFDKFGMRN-----------------NVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGNIHVLF 249

  Fly   380 DPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLG--- 441
            :|:..|:||.|..:...:...:..|..:            :.:.:.||.||.|.|.:.:|:.   
plant   250 NPKRGDIKLGQVRLFLEKAYKLSQEWGN------------IPVAIAGDLNSTPQSAIYDFIASAD 302

  Fly   442 -------------------KGRVSMDHLDFKDMGYKSCLQRLLS-------------NDTNEFTH 474
                               |.|...:|..|.  ...|....||:             .:|....|
plant   303 LDTQLHDRRQISGQTEVEPKERSFRNHYAFS--ASASISGSLLNEWSQEELQLATGGQETTHVQH 365

  Fly   475 SFKLASAYNEDIMPHTNYTFD-------------FKGIIDYIFYTKTGMVPLGLLGPVSNDWLRE 526
            ..||.|||:.  :|.|..|.|             |.|.:|||::||. :||:.:|..:..|.|| 
plant   366 QLKLNSAYSG--VPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKE-LVPVRVLETLPADVLR- 426

  Fly   527 NKVVGCPHPHIPSDHFPLLVEL 548
             :..|.|..:..|||..:..||
plant   427 -RTGGLPSENWGSDHLAIACEL 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twinNP_732964.1 LRR <52..>155 CDD:443914 1/1 (100%)
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378
leucine-rich repeat 122..144 CDD:275378
leucine-rich repeat 145..156 CDD:275378 1/2 (50%)
Deadenylase_CCR4 209..550 CDD:197331 104/394 (26%)
AT1G73875NP_683491.2 EEP 104..447 CDD:469791 102/390 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.