DRSC/TRiP Functional Genomics Resources

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Protein Alignment twin and pde12

DIOPT Version :10

Sequence 1:NP_732964.1 Gene:twin / 42880 FlyBaseID:FBgn0011725 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001038753.2 Gene:pde12 / 692319 ZFINID:ZDB-GENE-060519-25 Length:591 Species:Danio rerio


Alignment Length:373 Identity:105/373 - (28%)
Similarity:159/373 - (42%) Gaps:92/373 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 VMCYNVLCDKYATRQ-----MYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFF 268
            |:.||:|.|.||...     :|.||..:||..:||:..|..|:..|.||||.|||::...|....
Zfish   273 VVSYNILADVYAQTDLSKTVLYPYCAPYALQMDYRQNLIKKELSGYNADIICLQEVDKCVFVDLL 337

  Fly   269 LPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAMANAEGSDN 333
            .|.|...|.:|:|          .::.|..:|.|.:||.||..|:               |..|.
Zfish   338 CPALDAFGLDGVF----------RIKEKQHEGLATYFRRSKLKLV---------------EQYDV 377

  Fly   334 MLNRVMPKDNIGLAALLKVKENAWEPMS----------------EVTQI------SQPLLVCTAH 376
            ||:..:..|        .:....||.:|                :||.:      |:.|.|...|
Zfish   378 MLSEALTTD--------PIHRQLWEKVSCSPSLKEKIEKRSTTLQVTVLQSLCDPSRILCVGNTH 434

  Fly   377 IHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLG 441
            ::|.||..:|:|:|..:....:|.::.|.    .||       .:|:..|||||.|.||:.:.|.
Zfish   435 LYWRPEGGNVRLVQIAVALEHMKQVVTEK----HPG-------ARLIFSGDFNSTPSSGLFQLLS 488

  Fly   442 KGRVSMDHLDFKDMGYKSCLQRLLSNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYT 506
            :|.:..||.|:...|.:..::..|:|       .|:|:||..  :...||:...|:|.:||||..
Zfish   489 QGCIPEDHEDWGSGGPEEQIRLGLTN-------PFQLSSACG--VPDFTNFVGGFQGCLDYIFVE 544

  Fly   507 KTGM-----VPLGLLGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELE 549
            ...:     :||..|..|||       .|..|....||||..|:.:|:
Zfish   545 PRTLQVEQVIPLPSLEEVSN-------CVALPSISHPSDHIALVCDLK 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twinNP_732964.1 LRR <52..>155 CDD:443914
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378
leucine-rich repeat 122..144 CDD:275378
leucine-rich repeat 145..156 CDD:275378
Deadenylase_CCR4 209..550 CDD:197331 105/373 (28%)
pde12NP_001038753.2 EEP 273..586 CDD:469791 105/373 (28%)
Blue background indicates that the domain is not in the aligned region.

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