DRSC/TRiP Functional Genomics Resources

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Protein Alignment twin and Cnot6

DIOPT Version :10

Sequence 1:NP_732964.1 Gene:twin / 42880 FlyBaseID:FBgn0011725 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001380807.1 Gene:Cnot6 / 287249 RGDID:1310783 Length:557 Species:Rattus norvegicus


Alignment Length:539 Identity:305/539 - (56%)
Similarity:388/539 - (71%) Gaps:14/539 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KDKYDSAN-RRQQIFLSQEDIAAGKKTNWSGLEITGCVRNISPSLWEFEHLTALYLNDNQLLRLP 90
            |:||:..: ||....:|.|:.|.|||::|:.|||:|.||::|.|||...|||||:|:||.|..:|
  Rat     3 KEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSDNSLSCIP 67

  Fly    91 ADVGMLTSLRTLDLSSNKLRSLPAELGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPL 155
            :|:..|.:|..||||.|:::|||||||.::.||||.||.|.|||||:|:||||.|..|.|.||||
  Rat    68 SDIAKLHNLVYLDLSHNQIQSLPAELGNMVSLRELHLNYNQLRVLPFELGKLFQLQTLSLKGNPL 132

  Fly   156 QKEFMNIYNEPNGTQKLLTYMLDNLSFT-----VNPPPQRPWLPLAKPNKTRPACIFTVMCYNVL 215
            .::.:|:..||:||::||.|:|||||.|     ...||.|.|:.|.:|::|||..:|:|||||||
  Rat   133 TQDILNLCLEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVL 197

  Fly   216 CDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPELKNDGYEGI 280
            ||||||||:|||||||||.|:||||:||.||....||||||||:||||:|.|||.|||..||.|.
  Rat   198 CDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGF 262

  Fly   281 FSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAMANAEGSDNMLNRVMPKDNIG 345
            |||||||:||||.|||:||||||||:..||||:::..:|||||||||:|||:.||||||.|||||
  Rat   263 FSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIG 327

  Fly   346 LAALLKVKENAWEPMSEVTQI---SQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASH 407
            :|.||::::...|..|....:   .|.:||..||:|||||:.||||:||||..:|:|.|||:||.
  Rat   328 VAVLLELRKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASR 392

  Fly   408 SFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLLSNDTN-- 470
            |.:.....:...:.|:||.|.||||||||||:|..|.|..:|.|||::.|...|.....|..|  
  Rat   393 SLKSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGM 457

  Fly   471 ---EFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSNDWLRENKVVGC 532
               ..||.|||.|||...:||:||||||||||||||||:|..:..|.:|||:.:.||.||.:.||
  Rat   458 TNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGC 522

  Fly   533 PHPHIPSDHFPLLVELELM 551
            |||.||||||.|..:|||:
  Rat   523 PHPLIPSDHFSLFAQLELL 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twinNP_732964.1 LRR <52..>155 CDD:443914 58/102 (57%)
leucine-rich repeat 76..98 CDD:275378 11/21 (52%)
leucine-rich repeat 99..121 CDD:275378 13/21 (62%)
leucine-rich repeat 122..144 CDD:275378 16/21 (76%)
leucine-rich repeat 145..156 CDD:275378 6/10 (60%)
Deadenylase_CCR4 209..550 CDD:197331 208/348 (60%)
Cnot6NP_001380807.1 LRR <51..>133 CDD:443914 48/81 (59%)
LRR 1 52..73 11/20 (55%)
leucine-rich repeat 53..75 CDD:275378 11/21 (52%)
LRR 2 75..96 13/20 (65%)
leucine-rich repeat 76..98 CDD:275378 13/21 (62%)
LRR 3 98..120 15/21 (71%)
leucine-rich repeat 99..121 CDD:275378 16/21 (76%)
LRR 4 121..143 8/21 (38%)
leucine-rich repeat 122..133 CDD:275378 6/10 (60%)
Nuclease domain. /evidence=ECO:0000250 153..557 226/389 (58%)
Deadenylase_CCR4a 191..540 CDD:197340 208/348 (60%)

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