DRSC/TRiP Functional Genomics Resources

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Protein Alignment twin and Pde12

DIOPT Version :10

Sequence 1:NP_732964.1 Gene:twin / 42880 FlyBaseID:FBgn0011725 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_848783.3 Gene:Pde12 / 211948 MGIID:2443226 Length:608 Species:Mus musculus


Alignment Length:376 Identity:110/376 - (29%)
Similarity:163/376 - (43%) Gaps:85/376 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 TRPACIFTVMCYNVLCDKYATRQ-----MYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIE 260
            |..:.|.|| .||:|.|.||..:     :|.||..:||..:||:..|..|:..|.||:|.|||::
Mouse   289 TEDSFIRTV-SYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVD 352

  Fly   261 TEQFYHFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAM 325
            ...|....:|.|:..|.||:|..|..            :|.|.|:|.|||.|:.:..|.|.:   
Mouse   353 RAVFSDSLVPALEAFGLEGVFRIKQH------------EGLATFYRKSKFRLLSQHDISFQE--- 402

  Fly   326 ANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQI---------SQPLLVCTAHIHWDP 381
              |..||.:...::.|..:...|..||.:.     |.|.||         |:.:.|...|::|.|
Mouse   403 --ALKSDPLHKELLEKLALNPLAQEKVLQR-----SSVLQISVLQSTTDSSKKICVANTHLYWHP 460

  Fly   382 EFCDVKLIQTMMLSNELKTI-IDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLGKGRV 445
            :...::|||.     |:..: |...|....||       :.::.||||||.|.:|:..|:..|.:
Mouse   461 KGGYIRLIQM-----EVALVHIRHVSRDLYPG-------IPVIFCGDFNSTPSTGMYHFVISGSI 513

  Fly   446 SMDHLDFKDMGYKSCLQRLLSNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGM 510
            :.||.|:...|.:......||       |.|||.||..|.  .:|||...|.|.:||||      
Mouse   514 AEDHEDWASNGEEERCSMPLS-------HCFKLKSACGEP--AYTNYVGGFHGCLDYIF------ 563

  Fly   511 VPLGLLGPVSNDWLRENKVVGCP-HPHI-----------PSDHFPLLVELE 549
                    :..:.|...:|:..| |..:           ||||..|:.:|:
Mouse   564 --------IDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLK 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twinNP_732964.1 LRR <52..>155 CDD:443914
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378
leucine-rich repeat 122..144 CDD:275378
leucine-rich repeat 145..156 CDD:275378
Deadenylase_CCR4 209..550 CDD:197331 107/368 (29%)
Pde12NP_848783.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..111
EEP 298..607 CDD:469791 106/366 (29%)
Blue background indicates that the domain is not in the aligned region.

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