DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6204 and Helz

DIOPT Version :9

Sequence 1:NP_651229.2 Gene:CG6204 / 42877 FlyBaseID:FBgn0039165 Length:903 Species:Drosophila melanogaster
Sequence 2:NP_938040.1 Gene:Helz / 78455 MGIID:1925705 Length:1965 Species:Mus musculus


Alignment Length:1020 Identity:211/1020 - (20%)
Similarity:349/1020 - (34%) Gaps:288/1020 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QDENKLLQG------LEKSLKSLELQK-NEEYIECPPSERKCPPSEVGEYVMQHTRFSLTELTNA 68
            |.|||.|.|      :||.:.||..:| ..|.||....|.....|     |..:|:.|....|.|
Mouse   225 QSENKQLSGSYMETLIEKWMSSLSPEKVLSECIEGVQVEHSPDLS-----VTVNTKKSHQTWTFA 284

  Fly    69 LKMPAIDMFLYFLSDKRDLFENQ-----VLATDNVKRVGLFVDVLWSLCELELGG---------- 118
            |......| ||.::...|.....     :.|.|:..:|...|.   ..|:..:||          
Mouse   285 LTCKPARM-LYRVALLYDAHRPHFSIIAISAGDSTTQVSQEVP---ENCQEWIGGKMAQNGLDHY 345

  Fly   119 -------FDEVFLSAFSRQTALLD-KIKNLLQAKAAVAKCDAESALILSHSKWMLLRAHKH---- 171
                   |:......| |||.:.| .::.:|..:..:.....|....|.|:|..|:...|.    
Mouse   346 VYKVGIAFNTEIFGTF-RQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKRQLVTTAKRWDSS 409

  Fly   172 --GLLSHQGYELVELYKKLAPSFKSDMIDGLEAFTGNFSHNVKGLIYPTLETLLGKDATKAPNEE 234
              .::..:..|..:|.|.|...::.. :...:.||               :::|.|..||...:.
Mouse   410 SKTIVDFEPNETTDLEKSLLIRYQIP-LSADQLFT---------------QSVLDKSLTKTNYQA 458

  Fly   235 E-DEGLVSDKVVKYVNALRNLLREDFLAPLVEFVQQLRSGTDVDELKQQGLLWSDVHL------- 291
            . .:.|..:::.:|....|..|:.. |..|..|:....||.  .:..|.|.|:....|       
Mouse   459 RLHDLLYIEEIAQYKEVSRFNLKVQ-LQILASFMLTGVSGG--AKYAQNGQLFGRFKLTETLSED 520

  Fly   292 TLNPQFANAQRHSLVFLKV--------QFTKESKNAYKTWLNSIKSGTLLCLTTSLAFDDLILAS 348
            ||..:....:.:::..|.|        |.|||     |.:..:|:..|          .|.:...
Mouse   521 TLAGRLVMTRVNAVYLLPVPKEKLVQSQGTKE-----KVYEATIEEKT----------KDYVFLR 570

  Fly   349 VG--YTEPEKLKEDCLSVQIVKQYNIGNAYNRPLIMFQAPVFFEPYLRVHNYLSTCSTEKFPMGR 411
            :.  ..|...|:.|| .:|:..|:.:                        |.|..|..      .
Mouse   571 ISRECCEELSLRPDC-DIQVELQFQL------------------------NRLPLCEM------H 604

  Fly   412 YIVDGQMEIPPPAYMKPGVKLSFNMKPFTLDKLPE-------DLHLNESQKTAFKEALCREFSI- 468
            |.:|   .|...|.:.|.:    :|.| |:...|.       |..||..||.|.. |:....|| 
Mouse   605 YALD---RIKDNAVLFPDI----SMTP-TIPWSPNRQWDEQLDPRLNAKQKEAVL-AITTPLSIQ 660

  Fly   469 -----IQGPPGTGKTHLSVQLVNSLIQNAKALGTGPIIVLTYTNNSLDKFLVKISRYTQEILRFG 528
                 |.||.|||||....|....::|..:   |..|::.|::|::.|.:   |..|....:..|
Mouse   661 LPPVLIIGPYGTGKTFTLAQAAKHILQQQE---TSRILICTHSNSAADLY---IKDYLHPYVEAG 719

  Fly   529 NQSRDPQISKFNLSTTIKPELVPPRLKRIWWLVNCEYKEKFRN--------LQGLYANFDGSEES 585
            |                 |:..|.|:             .|||        :...|.....::.:
Mouse   720 N-----------------PQARPLRV-------------YFRNRWVKTVHPVVHQYCLISSTQST 754

  Fly   586 YQDTLAAQEKLNQVAERIETLRMVFQFFLAREKDLLAMTTTCAARHNFLFRLL---QSKC----- 642
            :|                          :.:::|:|        :|..:...|   |..|     
Mouse   755 FQ--------------------------MPQKEDIL--------KHRVVVVTLSTSQYLCQLDLE 785

  Fly   643 ------VLFEEAAEIQEAHIVACLTPHTEH--VILVGDHKQLQPFSGSRKVPQ----ISLFERL- 694
                  ||.:|||:..|...:..|...|::  ::|.|||.||.||..|....:    :||.:|| 
Mouse   786 PGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLY 850

  Fly   695 --IVAGLPFSRLNL--QYRMRSCISELLVPSIYD-ELLCSESVKEYEDIRLMSKNLYFVQHNQPE 754
              ..|..| .|:.|  .||....|........|: :|:.|.....::|...::   :|....:..
Mouse   851 EHYPAEFP-CRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPLT---FFTARGEDV 911

  Fly   755 HCMSDMSIGNLYEAGVLAKLTEFLIQK-----AQYKHSDIVILSPYNGQIECIKNALPQNYRSTV 814
            ...:..:..|..|...:.:..|.|.:|     .:.....|.:::||..|:..|:..|.:...|.|
Mouse   912 QEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDV 976

  Fly   815 QVASVDSFQGLEANIVLLSLVRSNISGR---------------------IGFLRQANRVCVALSR 858
            .|..|.:.||.:..::.||.||:..:.:                     .|||.....:..|::|
Mouse   977 NVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITR 1041

  Fly   859 ARWALYIVGNVTILKD--TFPKIWNPIVKRLKENNAI-GEAFPTI 900
            |:..:.:||:...|..  ...|.|...:....||::: |..|..|
Mouse  1042 AQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHGITFEQI 1086

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6204NP_651229.2 AAA_11 449..679 CDD:289831 55/259 (21%)
AAA_19 467..>513 CDD:289986 17/51 (33%)
UvrD_C_2 688..869 CDD:304668 45/212 (21%)
HelzNP_938040.1 zf-CCCH 181..204 CDD:366217
DEXXQc_HELZ 641..868 CDD:350835 66/298 (22%)
DEAA box 795..798 1/2 (50%)
SF1_C_Upf1 869..1069 CDD:350195 38/202 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1117..1136
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1249..1351
Atrophin-1 1262..>1416 CDD:367360
Amelogenin <1338..>1414 CDD:197891
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1361..1380
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1389..1450
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1464..1492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1632..1656
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1744..1965
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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