Sequence 1: | NP_651229.2 | Gene: | CG6204 / 42877 | FlyBaseID: | FBgn0039165 | Length: | 903 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_003751614.1 | Gene: | Upf1 / 684558 | RGDID: | 1589127 | Length: | 1124 | Species: | Rattus norvegicus |
Alignment Length: | 747 | Identity: | 189/747 - (25%) |
---|---|---|---|
Similarity: | 314/747 - (42%) | Gaps: | 159/747 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 229 KAPNEEEDEGLVSDKV-VKYVNALRNLLREDFLAPLVEFVQQLRSGTDVDELKQQGLLWSDVHLT 292
Fly 293 LNPQFANAQRHSLVF-----LKVQFTKESK------NAYKTW---LNSIKSGTLLCLTTSLAFDD 343
Fly 344 LILASVGYTEPEKLKEDCLS---------------VQIVKQY------NIGNAYNRPLIM---FQ 384
Fly 385 APVFFE--PYLRVHNYLSTCSTEKFPMGRYI-----------VDGQMEIPPPAYMKPGVKLSFNM 436
Fly 437 KPFTLDKLPEDLHLNESQKTAFKEALCREFSIIQGPPGTGKTHLSVQLVNSLIQNAKALGTGPII 501
Fly 502 VLTYTNNSLDKFLVKISRYTQEILRFGNQSR---DPQISKFNLSTTIKPELVPPRLKRIWWLVNC 563
Fly 564 EYKEKFRNLQGLYANFDGSEESYQDTLAAQEKLNQVAERIETLRMVFQFFLAREKDLL----AMT 624
Fly 625 TTCAARHNFLFRLLQSKCVLFEEAAEIQEAHIVACLTP---HTEHVILVGDHKQLQPFSGSRKVP 686
Fly 687 QI----SLFERLIVAGLPFSRLNLQYRMRSCISELLVPSIYDELL-----CSESVKEYEDIRLMS 742
Fly 743 KN---LYFVQHNQPEHCMSDMSIGNLYEAGVLAKLTEFLIQKAQYKHSDIVILSPYNGQIECI-- 802
Fly 803 ----KNALPQNYRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGFLRQANRVCVALSRARWAL 863
Fly 864 YIVGNVTILKDTFPKIWNPIVKRLKENNAIGE 895 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG6204 | NP_651229.2 | AAA_11 | 449..679 | CDD:289831 | 64/239 (27%) |
AAA_19 | 467..>513 | CDD:289986 | 20/45 (44%) | ||
UvrD_C_2 | 688..869 | CDD:304668 | 69/198 (35%) | ||
Upf1 | XP_003751614.1 | DNA2 | 140..915 | CDD:224037 | 189/747 (25%) |
DEXXQc_UPF1 | 476..709 | CDD:350797 | 77/276 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |