DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6204 and Upf1

DIOPT Version :9

Sequence 1:NP_651229.2 Gene:CG6204 / 42877 FlyBaseID:FBgn0039165 Length:903 Species:Drosophila melanogaster
Sequence 2:XP_003751614.1 Gene:Upf1 / 684558 RGDID:1589127 Length:1124 Species:Rattus norvegicus


Alignment Length:747 Identity:189/747 - (25%)
Similarity:314/747 - (42%) Gaps:159/747 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 KAPNEEEDEGLVSDKV-VKYVNALRNLLREDFLAPLVEFVQQLRSGTDVDELKQQGLLWSDVHLT 292
            |.|:|:|.  |.:.:: .:.:|.|..|.:|:..|.|             ::|::.|:.....|:.
  Rat   239 KIPSEQEQ--LRARQITAQQINKLEELWKENPSATL-------------EDLEKPGVDEEPQHVL 288

  Fly   293 LNPQFANAQRHSLVF-----LKVQFTKESK------NAYKTW---LNSIKSGTLLCLTTSLAFDD 343
            |  ::.:|.::..:|     |:..:.|:.|      |....|   ||..:........|....:|
  Rat   289 L--RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNED 351

  Fly   344 LILASVGYTEPEKLKEDCLS---------------VQIVKQY------NIGNAYNRPLIM---FQ 384
            |::..:......:..|.||.               :::...|      .:.::...|:.:   ||
  Rat   352 LVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQ 416

  Fly   385 APVFFE--PYLRVHNYLSTCSTEKFPMGRYI-----------VDGQMEIPPPAYMKPGVKLSFNM 436
            ....::  .:.|:.:.|.|.:.::..:..||           |..:.::|               
  Rat   417 VDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLP--------------- 466

  Fly   437 KPFTLDKLPEDLHLNESQKTAFKEALCREFSIIQGPPGTGKTHLSVQLVNSLIQNAKALGTGPII 501
            |.||...||:   ||.||..|.|..|.|..|:||||||||||..|..:|..|.:.    |.||::
  Rat   467 KRFTAQGLPD---LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----GNGPVL 524

  Fly   502 VLTYTNNSLDKFLVKISRYTQEILRFGNQSR---DPQISKFNLSTTIKPELVPPRLKRIWWLVNC 563
            |...:|.::|:...||.:...:::|...:||   |..:|...|...|:               |.
  Rat   525 VCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIR---------------NM 574

  Fly   564 EYKEKFRNLQGLYANFDGSEESYQDTLAAQEKLNQVAERIETLRMVFQFFLAREKDLL----AMT 624
            :...:.:.||.|       ::...:..:|.||..:..:|            ..|::||    .:.
  Rat   575 DSMPELQKLQQL-------KDETGELSSADEKRYRALKR------------TAERELLMNADVIC 620

  Fly   625 TTCAARHNFLFRLLQSKCVLFEEAAEIQEAHIVACLTP---HTEHVILVGDHKQLQPFSGSRKVP 686
            .||....:.....:|.:.:|.:|:.:..|..   |:.|   ..:.:||||||.||.|....:|..
  Rat   621 CTCVGAGDPRLAKMQFRSILIDESTQATEPE---CMVPVVLGAKQLILVGDHCQLGPVVMCKKAA 682

  Fly   687 QI----SLFERLIVAGLPFSRLNLQYRMRSCISELLVPSIYDELL-----CSESVKEYEDIRLMS 742
            :.    ||||||:|.|:...||.:||||...:|.......|:..|     .::.||:..|.:...
  Rat   683 KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ 747

  Fly   743 KN---LYFVQHNQPEHCMSDMSIGNLYEAGVLAKLTEFLIQKAQYKHSDIVILSPYNGQIECI-- 802
            .:   .::|...|.|...|..|..|..||..:.|:|..|: ||..|...|.|::||.||...:  
  Rat   748 PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL-KAGAKPDQIGIITPYEGQRSYLVQ 811

  Fly   803 ----KNALPQNYRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGFLRQANRVCVALSRARWAL 863
                ..:|.......|::||||:|||.|.:.::||.||:|....||||....|:.|||:|||:.:
  Rat   812 YMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876

  Fly   864 YIVGNVTILKDTFPKIWNPIVKRLKENNAIGE 895
            .||||...|..  ..:||.::...||..|:.|
  Rat   877 IIVGNPKALSK--QPLWNHLLSYYKEQKALVE 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6204NP_651229.2 AAA_11 449..679 CDD:289831 64/239 (27%)
AAA_19 467..>513 CDD:289986 20/45 (44%)
UvrD_C_2 688..869 CDD:304668 69/198 (35%)
Upf1XP_003751614.1 DNA2 140..915 CDD:224037 189/747 (25%)
DEXXQc_UPF1 476..709 CDD:350797 77/276 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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