DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6204 and UPF1

DIOPT Version :9

Sequence 1:NP_651229.2 Gene:CG6204 / 42877 FlyBaseID:FBgn0039165 Length:903 Species:Drosophila melanogaster
Sequence 2:XP_016882594.1 Gene:UPF1 / 5976 HGNCID:9962 Length:1137 Species:Homo sapiens


Alignment Length:755 Identity:188/755 - (24%)
Similarity:313/755 - (41%) Gaps:167/755 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 KAPNEEEDEGLVSDKV-VKYVNALRNLLREDFLAPLVEFVQQLRSGTDVDELKQQGLLWSDVHLT 292
            |.|:|:|.  |.:.:: .:.:|.|..|.:|:..|.|             ::|::.|:.....|:.
Human   244 KIPSEQEQ--LRARQITAQQINKLEELWKENPSATL-------------EDLEKPGVDEEPQHVL 293

  Fly   293 LNPQFANAQRHSLVF-----LKVQFTKESK------NAYKTW---LNSIKSGTLLCLTTSLAFDD 343
            |  ::.:|.::..:|     |:..:.|:.|      |....|   ||..:........|....:|
Human   294 L--RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNED 356

  Fly   344 LILASVGYTEPEKLKEDCLSVQ------------IVK-----------------QYNIGNAYNRP 379
            |::..:......:..|.||..:            ::|                 ...:.::...|
Human   357 LVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNANLTQHTDYGDEIAIELRSSVGAP 421

  Fly   380 LIM---FQAPVFFE--PYLRVHNYLSTCSTEKFPMGRYI-----------VDGQMEIPPPAYMKP 428
            :.:   ||....::  .:.|:.:.|.|.:.::..:..||           |..:.::|       
Human   422 VEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLP------- 479

  Fly   429 GVKLSFNMKPFTLDKLPEDLHLNESQKTAFKEALCREFSIIQGPPGTGKTHLSVQLVNSLIQNAK 493
                    |.||...||:   ||.||..|.|..|.|..|:||||||||||..|..:|..|.:.  
Human   480 --------KRFTAQGLPD---LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-- 531

  Fly   494 ALGTGPIIVLTYTNNSLDKFLVKISRYTQEILRFGNQSR---DPQISKFNLSTTIKPELVPPRLK 555
              |.||::|...:|.::|:...||.:...:::|...:||   |..:|...|...|:         
Human   532 --GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIR--------- 585

  Fly   556 RIWWLVNCEYKEKFRNLQGLYANFDGSEESYQDTLAAQEKLNQVAERIETLRMVFQFFLAREKDL 620
                  |.:...:.:.||.|       ::...:..:|.||..:..:|            ..|::|
Human   586 ------NMDSMPELQKLQQL-------KDETGELSSADEKRYRALKR------------TAEREL 625

  Fly   621 L----AMTTTCAARHNFLFRLLQSKCVLFEEAAEIQEAHIVACLTP---HTEHVILVGDHKQLQP 678
            |    .:..||....:.....:|.:.:|.:|:.:..|..   |:.|   ..:.:||||||.||.|
Human   626 LMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE---CMVPVVLGAKQLILVGDHCQLGP 687

  Fly   679 FSGSRKVPQI----SLFERLIVAGLPFSRLNLQYRMRSCISELLVPSIYDELL-----CSESVKE 734
            ....:|..:.    ||||||:|.|:...||.:||||...:|.......|:..|     .::.||:
Human   688 VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK 752

  Fly   735 YEDIRLMSKN---LYFVQHNQPEHCMSDMSIGNLYEAGVLAKLTEFLIQKAQYKHSDIVILSPYN 796
            ..|.:....:   .::|...|.|...|..|..|..||..:.|:|..|: ||..|...|.|::||.
Human   753 GFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL-KAGAKPDQIGIITPYE 816

  Fly   797 GQIECI------KNALPQNYRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGFLRQANRVCVA 855
            ||...:      ..:|.......|::||||:|||.|.:.::||.||:|....||||....|:.||
Human   817 GQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA 881

  Fly   856 LSRARWALYIVGNVTILKDTFPKIWNPIVKRLKENNAIGE 895
            |:|||:.:.||||...|..  ..:||.::...||...:.|
Human   882 LTRARYGVIIVGNPKALSK--QPLWNHLLNYYKEQKVLVE 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6204NP_651229.2 AAA_11 449..679 CDD:289831 64/239 (27%)
AAA_19 467..>513 CDD:289986 20/45 (44%)
UvrD_C_2 688..869 CDD:304668 69/198 (35%)
UPF1XP_016882594.1 DNA2 145..928 CDD:224037 188/755 (25%)
DEXXQc_UPF1 489..722 CDD:350797 77/276 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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