DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6204 and ighmbp2

DIOPT Version :9

Sequence 1:NP_651229.2 Gene:CG6204 / 42877 FlyBaseID:FBgn0039165 Length:903 Species:Drosophila melanogaster
Sequence 2:NP_001038365.1 Gene:ighmbp2 / 556484 ZFINID:ZDB-GENE-050419-258 Length:997 Species:Danio rerio


Alignment Length:740 Identity:170/740 - (22%)
Similarity:294/740 - (39%) Gaps:204/740 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 EDFLAPLVEFVQQLRSGTDVDELKQQGLLWSDVHLTLNPQFANAQRHSLVFLKVQFTKESKNAYK 321
            |:|::..:|.:|:.|. .:::|.:    .|.:     |....|.|...:..:|:|...:....|.
Zfish     4 ENFVSKTLELLQEERE-AELEETR----AWQE-----NVSLKNLQHKGVCLMKLQIGSQHTGMYG 58

  Fly   322 TWL----------------NSIKSGTLLCL-----------------------TTSLAFDDLILA 347
            ..|                |:...|.::.|                       :.::||||.   
Zfish    59 RLLVIFEPRKCIGLSVLPSNTFGPGDIIGLYQAEGQALPTQLGSGVVTRATQASLTVAFDDT--- 120

  Fly   348 SVGYTEPEKLKEDCLSVQIVKQYNIGNAYNRPLIMFQAPVFFEPYLRVHNYLSTCSTEKFPMGRY 412
                .:...|..|.|       ||:....|.           ..|.|:.:.|.:           
Zfish   121 ----QDGTNLDRDGL-------YNLMKLAND-----------VTYRRLSSALKS----------- 152

  Fly   413 IVDGQMEIPPP-------AYMKPGV-----KLSFNMKPFTLDKLPEDLHLNESQKTAFKEALC-R 464
             ::|....|..       .|.:||:     .|.||           :..|::|||.|...|:. :
Zfish   153 -LNGYSNGPASHLISVLFGYSQPGILSHLYALEFN-----------NTKLDDSQKEAVSFAISQK 205

  Fly   465 EFSIIQGPPGTGKTHLSVQLV-NSLIQNAKALGTGPIIVLTYTNNSLDKFLVKISRYTQEILRFG 528
            :.:||.||||||||...|::: .::.|..|.|...|      :|.::|..:.::::...::||.|
Zfish   206 DVAIIHGPPGTGKTTTVVEVILQAVKQQQKVLCCAP------SNVAVDNLVERLAKNKVKVLRLG 264

  Fly   529 NQSR-DPQISKFNLSTTIKPELVPPRLKRIWWLVNCEYKEKFRNLQGLYANFDGSEESYQDTLAA 592
            :.:| ...|.|.:|...:                  .:.:....:..:..:.|   :::.:...|
Zfish   265 HPARLLESIQKHSLDAVL------------------AHSDNTNIISDIRKDMD---KAFNEIKKA 308

  Fly   593 QEK---------LNQVAERIETLRMVFQFFLAREKDLLAMTTTCAA-----RH--NFLFRLLQSK 641
            ::|         :.::...:.|........:.:..|::..|.|.|:     :|  |..|.|    
Zfish   309 RDKGQRSNLRREIGELRRELRTREETAISQILKRADVILATNTGASDDGPLKHLPNDHFDL---- 369

  Fly   642 CVLFEEAAEIQEAHI-VACLTPHTEHVILVGDHKQLQPF----SGSRKVPQISLFERLI--VAGL 699
             |:.:|.|:..|:.. :|.|  .....||.||:|||.|.    |.:.|...:||.||||  ....
Zfish   370 -VVIDECAQALESSCWIALL--KARKCILAGDYKQLPPTIKSQSAASKGLSVSLMERLIKKYGDS 431

  Fly   700 PFSRLNLQYRMRSCISELLVPSIYD-ELLCSESVKEY-----------EDIRLMSKNLYFVQH-- 750
            ....|..||||.|.|.:.....:|. :|:...||:::           |:.|:   .|..|..  
Zfish   432 VVRMLTTQYRMNSAIMQWASEQMYQGKLIAHPSVEKHLLRDLAGVADVEETRI---PLLLVDTAG 493

  Fly   751 ---NQPEHCMSDMSIGNLYEAGVLA----KLTEFLIQKAQYKHSDIVILSPYNGQIECIKNALPQ 808
               |:.|: ..:.|.||..|..::|    .|||..:|.     .||.|::|||.|::.::..|..
Zfish   494 CGLNEMEN-TDEQSKGNQGEVDIVALHIKALTEAGVQV-----KDIAIIAPYNLQVDLLRQKLSH 552

  Fly   809 NYRSTVQVASVDSFQGLEANIVLLSLVRSNISGRIGFLRQANRVCVALSRARWALYIV-GNVTIL 872
            .| :.:::.|||.|||.|...|:|||||||..|.:|||.:..|:.||::|||..|.:| .:.|:.
Zfish   553 KY-AELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARRQLVVVCDSQTVR 616

  Fly   873 KDTFPKIWNPIVKRLKENNAIGEAF 897
            ...|.|   .:|..:.::..:..||
Zfish   617 NHDFLK---SLVDYMSKHGELRTAF 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6204NP_651229.2 AAA_11 449..679 CDD:289831 55/249 (22%)
AAA_19 467..>513 CDD:289986 17/46 (37%)
UvrD_C_2 688..869 CDD:304668 68/204 (33%)
ighmbp2NP_001038365.1 TIGR00376 25..639 CDD:273041 164/718 (23%)
AAA_19 196..254 CDD:289986 19/63 (30%)
AAA_12 416..612 CDD:289832 68/205 (33%)
R3H_Smubp-2_like 719..778 CDD:100070
zf-AN1 901..937 CDD:279736
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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