DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHORD and Chordc1

DIOPT Version :9

Sequence 1:NP_651226.1 Gene:CHORD / 42874 FlyBaseID:FBgn0029503 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_080120.1 Gene:Chordc1 / 66917 MGIID:1914167 Length:331 Species:Mus musculus


Alignment Length:333 Identity:143/333 - (42%)
Similarity:214/333 - (64%) Gaps:26/333 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLNIKGCTLAKHSNVKP 68
            ||||||||.|||:.|:|::|.:|||.|.||||.||||||.:::.||::||:|.|||..:|::.||
Mouse     5 CYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP 69

  Fly    69 PEPEKPVKDESDKDEVIEVRAPIR----------EALPRPPIDSPLTVIQPTVAPALKDMVFAVK 123
            |||.||....::|.|:.|::...:          ||:.||..|.|:|.::..::.:||..:..:|
Mouse    70 PEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLK 134

  Fly   124 TPAA------QKSSDAIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMKFWSCCQKRT 182
            ..:.      ::.||.|::||:|||.||:.::.|..|....|.||.||||||||||:||||:::|
Mouse   135 LSSGSEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKT 199

  Fly   183 SDFSQFMAQKGCTYGEHKWVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRL 247
            |||:.|:||:|||.|:|.|.|::..||||.||:|||||...|.:::|||......|.:|.|...|
Mouse   200 SDFNTFLAQEGCTRGKHVWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSQVEANSTLL 264

  Fly   248 HVNLVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNLNFPNKKLPVVKK 312
            :|::||  :....|..:::|.|:::|..:...|..||:||.:.|.||..|::|     :||..||
Mouse   265 NVHIVF--EGEKEFHQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASL-----ELPTTKK 322

  Fly   313 SQVEEKKK 320
               :||:|
Mouse   323 ---QEKQK 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHORDNP_651226.1 CHORD 3..63 CDD:282781 36/58 (62%)
CHORD 138..199 CDD:282781 36/60 (60%)
p23_melusin_like 213..301 CDD:107238 31/87 (36%)
Chordc1NP_080120.1 Interaction with PPP5C. /evidence=ECO:0000269|PubMed:16083881 2..77 44/71 (62%)
CHORD 3..64 CDD:282781 36/58 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..82 8/19 (42%)
Interaction with HSP90AA1 and HSP90AB1. /evidence=ECO:0000269|PubMed:15642353, ECO:0000269|PubMed:16083881 65..316 99/257 (39%)
CHORD 155..216 CDD:282781 36/60 (60%)
p23_melusin_like 230..316 CDD:107238 32/92 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6377
eggNOG 1 0.900 - - E1_KOG1667
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8111
Inparanoid 1 1.050 302 1.000 Inparanoid score I2659
Isobase 1 0.950 - 0 Normalized mean entropy S3736
OMA 1 1.010 - - QHG51840
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002255
OrthoInspector 1 1.000 - - otm43934
orthoMCL 1 0.900 - - OOG6_102230
Panther 1 1.100 - - LDO PTHR12621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3238
SonicParanoid 1 1.000 - - X1489
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.810

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