DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHORD and chordc1

DIOPT Version :9

Sequence 1:NP_651226.1 Gene:CHORD / 42874 FlyBaseID:FBgn0029503 Length:354 Species:Drosophila melanogaster
Sequence 2:XP_031751712.1 Gene:chordc1 / 448329 XenbaseID:XB-GENE-962949 Length:335 Species:Xenopus tropicalis


Alignment Length:334 Identity:147/334 - (44%)
Similarity:214/334 - (64%) Gaps:20/334 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLNIKGCTLAKHSNVKP 68
            ||||||||.:||::|:|:||.:|||.|.||||.||||||.:::.||::||:|.|||...|||.||
 Frog     5 CYNRGCGQRYDPESNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGLHSNEKP 69

  Fly    69 PEPEKP-VKDESDKDE-----------VIEVRAPIREALPRPPIDSPLTVIQPTVAPALKDMVFA 121
            |||.|| ||..|:|.|           :|:...|| |.:.||..|.|:..:|..::.:||..:..
 Frog    70 PEPVKPEVKTTSEKKELADCKPKFNEHIIQAPKPI-ECINRPSSDEPMVKLQLKISASLKQALDK 133

  Fly   122 VK-----TPAAQKSSDAIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMKFWSCCQKR 181
            :|     ....::.|..|::||:|||.||..:|.|..|:...|.||.||||||||||:||||:::
 Frog   134 LKLSENDKAVTEEDSGEIKIGTSCKNGGCLKTFAGPQSNEEVCQYHNGVPIFHEGMKYWSCCRRK 198

  Fly   182 TSDFSQFMAQKGCTYGEHKWVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIR 246
            ||||:.|::|:|||.|.|.|.|::|.||||.||:|||||.:.|.::||||......|.:|.|...
 Frog   199 TSDFNTFLSQEGCTKGTHLWTKKDDGKKVVPCRHDWHQTGSGVTISIYAKNSLPELSYVEANSTI 263

  Fly   247 LHVNLVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNLNFPNKKLPVVK 311
            :::.:||  :....|..:::|.|:|:|:.:...:..|||||.|.|.||.:|:.|..|.:...:.|
 Frog   264 VNIQVVF--EGEKTFQQNVQLWGVVDVAKSYVSLTATKVEIFLKKAEPMTWARLELPQQAPSLPK 326

  Fly   312 KSQVEEKKK 320
            :::..|::|
 Frog   327 QNETSEEQK 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHORDNP_651226.1 CHORD 3..63 CDD:282781 36/58 (62%)
CHORD 138..199 CDD:282781 36/60 (60%)
p23_melusin_like 213..301 CDD:107238 32/87 (37%)
chordc1XP_031751712.1 CHORD 3..64 CDD:398569 36/58 (62%)
CHORD 155..216 CDD:398569 36/60 (60%)
p23_melusin_like 230..316 CDD:107238 32/87 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I6914
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8111
Inparanoid 1 1.050 308 1.000 Inparanoid score I2581
OMA 1 1.010 - - QHG51840
OrthoDB 1 1.010 - - D1163528at2759
OrthoFinder 1 1.000 - - FOG0002255
OrthoInspector 1 1.000 - - otm49108
Panther 1 1.100 - - LDO PTHR12621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3238
SonicParanoid 1 1.000 - - X1489
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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