DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHORD and Itgb1bp2

DIOPT Version :9

Sequence 1:NP_651226.1 Gene:CHORD / 42874 FlyBaseID:FBgn0029503 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_001101715.1 Gene:Itgb1bp2 / 317258 RGDID:1565015 Length:349 Species:Rattus norvegicus


Alignment Length:342 Identity:135/342 - (39%)
Similarity:187/342 - (54%) Gaps:24/342 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLNIKGCTLAKHSNVKP 68
            |||:||||.|||.||..:|||:|||.|.||||.||||||.|::|||:|||||||||:..|...|.
  Rat     5 CYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGPHCAEKL 69

  Fly    69 PE---PEKPVKDESDKDEVIEVRAPIREALPRPPIDSPLTVIQPTVAPALKDMVFAV-------- 122
            ||   ||.|......:.:.:.......|.|.|   :.|.:.:.|.:.|.|......|        
  Rat    70 PEVPQPEGPATSSLQEQKPLNTIPKSAETLLR---ERPKSEMPPKLLPLLISQALGVALEQKELD 131

  Fly   123 KTPAAQKSSDAIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQ 187
            :.|.|...:..|..|::|:|.||...:.|..||...||||||.|.||||||.||||..:|.||..
  Rat   132 QEPGAGLDNSLIWTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGA 196

  Fly   188 FMAQKGCTYGEHKWVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVNLV 252
            |:||.||..|.|.|.|:    ....||:|||||.:.||:.:|.:....:.:.::.:...|||::|
  Rat   197 FLAQPGCRVGRHDWAKQ----LPASCRHDWHQTDSLVVLTVYGQIPLPAFNWVKASQTELHVHIV 257

  Fly   253 FPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNLNFPNKKLPVVKKSQVEE 317
            |  ..|..|...::|.|::||..:|..:..::|||.|.|.:||||:.|..|:......:...:.|
  Rat   258 F--DGNRVFQAQMKLWGVINVEQSSVSLMPSRVEISLVKADPGSWAQLEHPDSLAEKARAGVLLE 320

  Fly   318 KKKQEESDEEFFDLDDI 334
            ..::|..|.:    ||:
  Rat   321 MDEEESEDSD----DDL 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHORDNP_651226.1 CHORD 3..63 CDD:282781 42/58 (72%)
CHORD 138..199 CDD:282781 33/60 (55%)
p23_melusin_like 213..301 CDD:107238 31/87 (36%)
Itgb1bp2NP_001101715.1 CHORD 3..64 CDD:282781 42/58 (72%)
CHORD 148..208 CDD:282781 33/59 (56%)
p23_melusin_like 218..304 CDD:107238 31/87 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334672
Domainoid 1 1.000 109 1.000 Domainoid score I6235
eggNOG 1 0.900 - - E1_KOG1667
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51840
OrthoDB 1 1.010 - - D1163528at2759
OrthoFinder 1 1.000 - - FOG0002255
OrthoInspector 1 1.000 - - otm46023
orthoMCL 1 0.900 - - OOG6_102230
Panther 1 1.100 - - O PTHR12621
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1489
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.720

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