DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Apc2 and apr-1

DIOPT Version :9

Sequence 1:NP_001334699.1 Gene:Apc2 / 42871 FlyBaseID:FBgn0026598 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_001021547.1 Gene:apr-1 / 172591 WormBaseID:WBGene00000156 Length:1188 Species:Caenorhabditis elegans


Alignment Length:1143 Identity:250/1143 - (21%)
Similarity:420/1143 - (36%) Gaps:301/1143 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TALRSSDCIQLLVQILH--------ANDEGLSTAKKYASQALHN----IVHNNPEEKERQREVKM 80
            ||:...|.|.:|:..||        ..||..:..::     ||.    ::.:..:...::|..|.
 Worm    61 TAIEVDDAITVLLSSLHFEHKRDIVPTDEDDNKLRE-----LHEKIFALITSESDVNRKRRLKKA 120

  Fly    81 LRLLDQILDYCNFLHTQLQSGGEAIADDEDRHPL-AAMKLLMKASFDEEHRQTMCELGALKAIPN 144
            |...:.:.:...:|..:..:...:.     .|.| ||:..::|.||.||:|:....||.::|:..
 Worm   121 LPASNCVREQVYYLRRKPSTPPASY-----YHRLNAALHTIVKESFGEEYRKVATVLGLVEALAE 180

  Fly   145 LVHLDHAVHGPAAGREQCNA-----LRSYGLMALTNLTFGDENVHNKSYLCGQRQFMEVVIAQLN 204
            ::.|:  ||  ..|..:.|.     :|.....||||||:|  .:|:|..||....|:..|:..:.
 Worm   181 VLILE--VH--TFGINETNPGEHRNIRKLIANALTNLTYG--QIHSKRRLCSYDGFIRCVVRIVI 239

  Fly   205 TAPDELLQVLAGVLRNLSWRADKHMKTIFNELGTVTSLARAAMQ-NKNENTLKAILSALWNLSAH 268
            .:|: :.||.||::|||||.||..|......  ||.:|:.||:. :.:...:.|.|||||||:.|
 Worm   240 ESPN-ITQVYAGLIRNLSWNADSGMSEALQP--TVHALSIAAVHAHTHRFDVTATLSALWNLAGH 301

  Fly   269 CSTNKAEFCAVDGALAFLVGMLSYEGPSKTLKIIENAGGILRNVSSHIAVCEPYRQILRRYNCLA 333
            ...||...|.....|..|..:||.:  ::...::::|.|||:.||.::|....:.::  |...:.
 Worm   302 SVENKRTICDTPNCLKVLASLLSPD--ARFTSLVDSATGILKYVSQYLANTSTHLEL--RSLLIT 362

  Fly   334 ILLQQLKSESLTVVSNSCGTLWNLSARCPEDQQYL-IDHNAIPLLRALISSKNSMIAEGSASALK 397
            .:|..|||.|.|.|:|:.|.:.||..:.|..||.: .|..|:..|..|.:|....|.....|.| 
 Worm   363 RMLTLLKSASFTCVTNTLGAIANLIVKDPHMQQMIRQDMAAVQQLNVLRNSNRDDIRTAVKSVL- 426

  Fly   398 NLVNFRATQEL--MPNGDGG--------SLP-LDKEAGH---GGTLPRRFSSLRLSSNPTGSLKK 448
            |.:|...:...  |.:..||        |.| |..:..|   .||...|..|||.:....|  |.
 Worm   427 NTLNQPCSHRYGDMSHSVGGGATGMQMLSEPQLQMQTSHHAYHGTASPRLLSLRATRASPG--KY 489

  Fly   449 VRPS----------------------TVSTTGFLNRKCESRESIYSGKSDSTKYSTKSEGAKNPF 491
            ::|.                      .|...||:..:.      |:.:.|..:........:...
 Worm   490 IQPQAQQQLIQTPQVDQRSSSLPRHFAVQRNGFVMAQS------YNQQMDQHQQQQMIYQLQQQQ 548

  Fly   492 EIVTPTEEQ-PIDYSMKYMEHKPNSSKTFEIDLDQPTDFSARYKERRSAQTAQPELKSETN-EIR 554
            :|:..||:| .:::..:.|..:....:..:|...|         :.:.||.|.|...::.: :|.
 Worm   549 QIMFQTEDQAQMEHHQQIMYLQQQQQQFHQIQQQQ---------QMQKAQEADPVPPTDDDLDIP 604

  Fly   555 SKELQLTKSSSATELRN-SPGLVAVSAAKQKIATETETETAERPINYCEEGTPGSFSRFDSLNSL 618
            :..:..|:|:|...|.: :||.| ::.....:.|...:..|..|::|               |.:
 Worm   605 TSTVMGTRSNSERSLGSMNPGSV-MTNWNSSLDTAANSSRALSPVSY---------------NDI 653

  Fly   619 TEKPEKC-----MPPKTPTKTAVLPVHVDGNTPQNIDSALETPLMFSRRSSMDSLVGDDETVACE 678
            ...|..|     :|..|.::      |      ..:.|..:....:|..|:......|..|....
 Worm   654 PASPTMCAQVFNLPKSTESE------H------HQLTSQQQNTTHYSSGSANTMTRSDGATTVPM 706

  Fly   679 DNGSVISEYSRMQSGVISPSELPDSPTQSMPQSPRRDRKVSTQNNLDTPEQKPSTVFEDKLNRFH 743
            ||             :|:|:....:|.....|:|.......|...||:|:.              
 Worm   707 DN-------------IITPTYAILNPILVHEQTPNGTVPRKTSEELDSPDD-------------- 744

  Fly   744 VEHTPAAFSCATSLSNLSMMDDSNANAIRGQRGNDINGNGDAPRSYCTED---TTAVLSKAPSNS 805
                        .|...|:.::....||.|         |.|.:   |:|   |.::.|:.|::|
 Worm   745 ------------VLPGPSLEEEEGDYAIIG---------GAAQK---TDDELLTRSIQSEMPTSS 785

  Fly   806 DLSILSIPNDLNA----------------NEAQPVPAPRADVTGMDTRMPAEDAISKMRCGGNAL 854
            ....:.:...||.                .:..|:|...:..|..:.|..|.||...:.   .::
 Worm   786 STPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLM---ESI 847

  Fly   855 PSYLPVSDEMS------KYYVEDSPCTFSVISGLSHLTVGSAKAGPVLKLPMRTAEEAQAPKLPP 913
            .|.:|.|..:|      :.|:|..|      ...||                ...|||.      
 Worm   848 MSEMPKSRIISPRLAGTQQYLEPEP------ERRSH----------------SKNEEAD------ 884

  Fly   914 RRSAVQGDAEPR-------------LPPKKSDSLSSL-SMDSDDDCNLLSQAIAAGSCRPQPSGA 964
            ||.|.....||.             .|.::...:.|| |..|.:|        :.|....:|: :
 Worm   885 RRDAFTASHEPSDHNGIDVARGSDWSPQQQLHRMESLESQASSED--------SFGLTAEEPN-S 940

  Fly   965 STSSSLAN---------ASTSTLCRENGQSKKQVEHGDKPNYSSD---DSLDDDD------DDAR 1011
            |||.:.||         ||....|.::          |..:|:.|   |..|::|      ||..
 Worm   941 STSGAAANTMRFDDEIDASLPMDCVDD----------DDYDYTYDHFEDYEDEEDPDATQFDDGV 995

  Fly  1012 SKSLFEQCILSGMHKSNDALESEGEPPGQRQEISARDR 1049
            ...|...|          ::.|.|....||.|.:...|
 Worm   996 DAQLTIDC----------SMISSGSGSSQRNETTTTSR 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Apc2NP_001334699.1 None
apr-1NP_001021547.1 armadillo repeat 221..257 CDD:293788 13/36 (36%)
armadillo repeat 306..345 CDD:293788 11/40 (28%)
ARM 312..431 CDD:237987 35/123 (28%)
armadillo repeat 354..386 CDD:293788 10/33 (30%)
VIR_N <756..898 CDD:292534 37/184 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159488
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002986
OrthoInspector 1 1.000 - - otm14695
orthoMCL 1 0.900 - - OOG6_105450
Panther 1 1.100 - - O PTHR12607
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2401
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.960

Return to query results.
Submit another query.