DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6178 and CMR2

DIOPT Version :9

Sequence 1:NP_651221.1 Gene:CG6178 / 42867 FlyBaseID:FBgn0039156 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_014736.1 Gene:CMR2 / 854260 SGDID:S000005619 Length:1648 Species:Saccharomyces cerevisiae


Alignment Length:601 Identity:116/601 - (19%)
Similarity:188/601 - (31%) Gaps:252/601 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GGPVTERQA---------------------QDSRSLGQYILDKYKSFGDRTVLVDAVNG--VEYS 54
            ||||..:.|                     .|.:|:.:.:..:..::|:.|...|..|.  |..|
Yeast   947 GGPVKPKLALQCSGVDYRDESVDTRSHTKLTDFKSILEILEWRISNYGNETAFSDGTNTNLVNSS 1011

  Fly    55 AS---FMHKSIVRLAY-----------ILQKLGVKQNDVVGLSSENSVNFALAMFAGLAVGATVA 105
            ||   .:||.:...::           :..|:.:|..|.:.:..||||.:...:.|.|.....|.
Yeast  1012 ASNDNNVHKKVSWASFGKIVAGFLKKIVGSKIPLKHGDPIIIMCENSVEYVAMIMACLYCNLLVI 1076

  Fly   106 PL-NVTYSDREVD-----HAINLSKPKIIFAS-------------------------KITIDRVA 139
            || :|..|..|.|     :.|...|.|.:|..                         |||:  .:
Yeast  1077 PLPSVKESVIEEDLKGLVNIIQSYKVKRVFVDAKLHSLLNDNNVVNKCFKKYKSLIPKITV--FS 1139

  Fly   140 KVASKNKFVKGIIALSGTSKKFKNIYDLKELMEDEKFKTQPDF---TSPA---ANKDEDVSLIVC 198
            ||.:||..         |...|||:  ||     :||..:|..   .:|.   .|.:.||:    
Yeast  1140 KVKTKNAL---------TVSMFKNV--LK-----QKFGAKPGTRIGMTPCVVWVNTEYDVT---- 1184

  Fly   199 SSGTTGLPKGVQLTQMNLLATLDSQIQPTVIPMEEVTLLTVIPWF----HA------FGCLTLIT 253
                         :.:::..|..|.:..:.|..|.:.|....|.|    |.      |.||..|.
Yeast  1185 -------------SNIHVTMTHSSLLNASKIVKETLQLRNNSPLFSICSHTSGLGFMFSCLLGIY 1236

  Fly   254 T---ACVGARLVYLPKFEEKLFLSAIEKYRVMMAFMVPPLMVFLAKHPIVDKYDLSSLMVLLCGA 315
            |   .|:.:....|.  :.|.||..::...|...::                 .|.:|..||..|
Yeast  1237 TGASTCLFSLTDVLT--DPKEFLIGLQNLNVKDLYL-----------------KLETLYALLDRA 1282

  Fly   316 APL--------------SRETEDQIKE-------RIGVPF-----------IRQGY---GLSEST 345
            :.|              ...|...::|       .|.:||           |.:.|   .||.:.
Yeast  1283 SSLIEGFKNKKENINSAKNNTSGSLREDVFKGVRNIMIPFPNRPRIYTIENILKRYSTISLSCTQ 1347

  Fly   346 LSVLVQN-----------------DEFCKPGSV--GVLK--------VGIYAK------------ 371
            :|.:.|:                 |.:..|.|:  |:::        .|.|.|            
Yeast  1348 ISYVYQHHFNPLISLRSYLDIPPVDLYLDPFSLREGIIREVNPNDVSAGNYIKIQDSGVVPVCTD 1412

  Fly   372 --VIDPDTGKLLGANERGEL--CFKGDGI-------------------------MKGYIGDTKST 407
              |::|:|.......|.||:  |.:.:..                         ||..:.:|.| 
Yeast  1413 VSVVNPETLLPCVDGEFGEIWCCSEANAFDYFVCNSSKNKLYKDPFITEQFKSKMKSEVNNTLS- 1476

  Fly   408 QTAIKDGWLHTGDIGY 423
                   :|.|||:|:
Yeast  1477 -------YLRTGDLGF 1485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6178NP_651221.1 PLN02246 26..537 CDD:215137 110/567 (19%)
Firefly_Luc_like 43..529 CDD:213279 107/550 (19%)
CMR2NP_014736.1 DMAP_binding 5..121 CDD:368923
AFD_class_I 179..893 CDD:418409
Dip2 1004..1626 CDD:341231 106/544 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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