DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6178 and hll

DIOPT Version :9

Sequence 1:NP_651221.1 Gene:CG6178 / 42867 FlyBaseID:FBgn0039156 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster


Alignment Length:644 Identity:145/644 - (22%)
Similarity:249/644 - (38%) Gaps:160/644 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PVTERQAQDSRSLGQYILDKYKSFGDRTVLVDAVNGV-----------EYSASFMHKSIVRLAYI 68
            |.:..|....:::.::..:..:.:.|...||....|.           ||     .:.:.:.|.:
  Fly    26 PSSFSQTVPPQTIPEFFKESCEKYSDLPALVWETPGSGNDGWTTLTFGEY-----QERVEQAALM 85

  Fly    69 LQKLGVKQNDVVGLSSENSVNFALAMFAGLAVGATVAPLNVTYSDREVDHAINLSKPKIIFASKI 133
            |..:||::...||:.:.|...:..|.|..|..||.||.:..:.|...|.|.:...:     :|..
  Fly    86 LLSVGVEERSSVGILAFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVLATGE-----SSVC 145

  Fly   134 TID---RVAKV-ASKNKF--VKGIIALSGTSKKF----KNIYDLKELMEDEKFKTQPDFTSPAAN 188
            .:|   ::||: |.|.:.  :|.:|.|.|..:.|    ...:..::|.|.         |..:..
  Fly   146 VVDDAQQMAKLRAIKERLPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQ---------TFSSEL 201

  Fly   189 KDE-----------DVSLIVCSSGTTGLPKGVQLTQMNLL-ATLDSQIQPTVIPMEEVTLLTVIP 241
            |:|           :.::::.:|||.|:||.|.|:..||: .|..:......|.:.:.:.::.:|
  Fly   202 KEELLARESRIRANECAMLIFTSGTVGMPKAVMLSHDNLVFDTKSAAAHMQDIQVGKESFVSYLP 266

  Fly   242 WFHA-------------FGCLTLITTACVGARLVY------------LPKFEEKL---FLSAIEK 278
            ..|.             .||:|......:...|:.            :|:..|||   .::|..|
  Fly   267 LSHVAAQIFDVFLGLSHAGCVTFADKDALKGTLIKTFRKARPTKMFGVPRVFEKLQERLVAAEAK 331

  Fly   279 YRVMMAFMVPPLMVFLAKH--------------------------PIVDKYDLSSLMVLLCGAAP 317
            .|.....::......:|:|                          ||.:...:.:..|...|.||
  Fly   332 ARPYSRLLLARARAAVAEHQTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAP 396

  Fly   318 LSRETEDQIKERIGVPF-IRQGYGLSESTLSVLVQNDEFCKPGSVGVLKVGIYAKVIDPDTGKLL 381
            .|.|.:...   :|:.. :.:.||:|| |...:..|.:.....|.|....|:..|:.:||     
  Fly   397 TSEELKQFF---LGLDIALGECYGMSE-TSGAITLNVDISNLYSAGQACEGVTLKIHEPD----- 452

  Fly   382 GANERGELCFKGDGIMKGYIG-DTKSTQTAIKDGWLHTGDIGYYDDDFEFFIVDRIKEL-IKYKG 444
             .|.:||:..:|..:..||:| ..|:.:|..:|||||:||:||.|......|..|:||| |...|
  Fly   453 -CNGQGEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKELIITAGG 516

  Fly   445 YQVPPAEIEAL-----------LLTNDKIKDAAVI----GKPDEEAGELPLAFVVKQANVQLTEN 494
            ..:||..||.|           ||..|..|...|:    .|.|.:.| :||..:.::....|.:.
  Fly   517 ENIPPVHIEELIKKELPCVSNVLLIGDHRKYLTVLLSLKTKCDAKTG-IPLDALREETIEWLRDL 580

  Fly   495 EV--------------IQFVNDNASPAKRLRGGVIFVDEIPKNPSGKILRRILREMLKK 539
            ::              :|..||.|:.|..|        ||...|  |:|..| .|.:|:
  Fly   581 DIHETRLSELLNIPADLQLPNDTAALAATL--------EITAKP--KLLEAI-EEGIKR 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6178NP_651221.1 PLN02246 26..537 CDD:215137 142/629 (23%)
Firefly_Luc_like 43..529 CDD:213279 138/604 (23%)
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 139/608 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24096
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.