DRSC/TRiP Functional Genomics Resources

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Protein Alignment Npc2f and Npc2

DIOPT Version :9

Sequence 1:NP_651219.1 Gene:Npc2f / 42864 FlyBaseID:FBgn0039154 Length:170 Species:Drosophila melanogaster
Sequence 2:NP_775141.2 Gene:Npc2 / 286898 RGDID:628756 Length:152 Species:Rattus norvegicus


Alignment Length:129 Identity:32/129 - (24%)
Similarity:54/129 - (41%) Gaps:7/129 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LPFEDCGS-LYQVSYLDIESCTTLPCSMARNATIKVTVRF---DDNGNGVSFLKHEVRWVFNYIK 104
            |.|:|||| :..:..:::..|.|.||.:.:..:..|.|.|   ..:.|..:.:...:..|..|..
  Rat    25 LHFKDCGSKVGVIKEVNVSPCPTQPCQLHKGQSYSVNVTFTSGTQSQNSTALVHGILAGVPVYFP 89

  Fly   105 TQAAITPDPCDGDHGCIESASGGKAYWANIFVNETLPVMKGSMLWESKDANDQNLICFQVPVVI 168
            ..   .||.|.....|........:|...:.|....|.:|..:.|:.:|....||.|:::||.|
  Rat    90 IP---EPDGCKCGINCPIQKDKVYSYLNKLPVKSEYPSLKLVVEWKLQDDKKDNLFCWEIPVEI 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Npc2fNP_651219.1 Npc2_like 46..166 CDD:238458 28/123 (23%)
Npc2NP_775141.2 Npc2_like 27..148 CDD:238458 28/123 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1612792at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11306
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.980

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