DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsc1 and tsc1

DIOPT Version :9

Sequence 1:NP_477415.1 Gene:Tsc1 / 42862 FlyBaseID:FBgn0026317 Length:1100 Species:Drosophila melanogaster
Sequence 2:NP_593028.1 Gene:tsc1 / 2541869 PomBaseID:SPAC22F3.13 Length:899 Species:Schizosaccharomyces pombe


Alignment Length:880 Identity:157/880 - (17%)
Similarity:286/880 - (32%) Gaps:279/880 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IGDLESNMTLENEEAKRKLVELLSQNKEQWVVKFMLDYFFTTGSQRILEVLVKAQAPHDGYIFDK 71
            :||:||      :|.:.:.:|.|        |..::.|    |.||..|                
pombe   159 LGDVES------QEQRNQTIECL--------VNVLVHY----GIQRPKE---------------- 189

  Fly    72 LDDCLKQSQH------RVQSLQVFCFIVRHHPTWLYKIEKHRLIKSVFKLMTHEKEIVPLMSALL 130
            |..|.  ..|      |:..|.|...::|.....||:|.:......|.|....:...:.|..||.
pombe   190 LSSCF--CHHFLNPPTRIPILSVMVEVIRRQGPRLYEIPQTGFYDLVLKCAEFDTSPILLSYALS 252

  Fly   131 CIITLLPIIPNSVPNFLNDLF------------------------EVFGHLASWKLQNSNKLPDE 171
            .|:.:|..|.||:.:.|..||                        |||....|.....:....|.
pombe   253 FILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWEVFHDFMSTYASTTTSQTDS 317

  Fly   172 KL--VH-----------LQLGLQMLFHRLYGMYPCSFIAYL-------------------VEFIK 204
            ..  ||           ..|....||..||.:||.:|:.:|                   .|.:.
pombe   318 SYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLEFLRDPKLYASKHNFQIRYSFNQELLS 382

  Fly   205 RGNGGGIFQHTIKPLLNTVRVHPMLVTATPETEV-NNTRWKEMEPHDVVMECANLS--------- 259
            ..:.|.:.:|.         .|...:..|.|||: :.:||..::...||..|.:|:         
pombe   383 TKSDGLLGRHL---------AHSNFLKYTAETELTDKSRWTRLDSIAVVALCNSLNAVGIAESVM 438

  Fly   260 ------LPVLLPETSNEDGSYAY----------------PMTPGYSRMTSNTSNTDYSYQLREFQ 302
                  ||....|||:..|..||                |..|..|....:.:..|.: ||...:
pombe   439 DPFGGKLPTTYEETSSATGLLAYPNESHDIASEPFSISWPQNPSISGSVHSATTFDKA-QLSNTE 502

  Fly   303 QSRNVYTRFDSFASGDDVGPIWSPH--------NEIATTSSGIPLTPTT-----SFILPLQPAMN 354
            .|.:..:...|::.|     :.|.|        |.:..||..:..|..|     ..:|.||..:.
pombe   503 DSYDNISHGTSYSEG-----VSSIHMVKGERGSNNLELTSESLSSTNDTIRRLQRDLLFLQNELR 562

  Fly   355 SQLMVGMTGSSPPEAAVEATPETTPLKDMRDIKQPGRAVNSHAV-RAIFAVSQPSSPMRKDQQSQ 418
            .:..|                      ..:.::..|:....|.: .|:.:..|......|..::|
pombe   563 FEKFV----------------------RQQHLQNIGKLHREHILDMAVESERQKLLLTNKRYKAQ 605

  Fly   419 FSFPDVSREAEESSHSYLEVNRGTAYDRRLS---QVIQDRHNVERSVNTPCPSSLPEINSDLSLV 480
            ....: |...:..|.|...:||...::...:   :.:::.....:|..:...||:..:.|.|.  
pombe   606 IELLN-SEIDKHRSESQAALNRRVKWENDFNNKIKALREEKKAWKSEESELKSSIESLISQLE-- 667

  Fly   481 GGSVYPSVTQEVAAVCGECNETDRNLCSVGGLHMPTSRSMHQLAKKRR---NRMASYSGNGSCAD 542
                                       |:....:..:.|.:||..|.:   .::..|..:.||.:
pombe   668 ---------------------------SIRNSQIDIAFSKNQLELKLQLYETKLKEYEQHLSCVN 705

  Fly   543 ----SRSSAAKKASWSTEAENPMRRTKSCSALSGMRQQHLEENDDEADCSSQRQRGENGNTQKTG 603
                ..||::..:..:|:.::.|..:.| .|:|..:::.|.|::..                   
pombe   706 ISKKQVSSSSDTSFGNTKMDSSMILSNS-EAVSDEQERELIESEKH------------------- 750

  Fly   604 SRLQRSGRNLAISAPKDTARSCTHASTQTVEGLDSAPAQYENWLIELLLECKEQRIDYERNLLYP 668
             |::....||.:.|..:..:          :.|::....||..:.:|     |:|:..|.|.  |
pombe   751 -RMKLESENLHLQANIELLK----------KDLEAINVVYEAKIFDL-----EKRLSSEANA--P 797

  Fly   669 QDILDEYIKHAIKANESFDAEQGQLMCLQLEYESYRRSIHAERNRRLMGRSRDKRSLEMERDRLR 733
            :      :.:.:..|  :||:..::..::..|:            .|:.|.|:.....:|.....
pombe   798 E------LHNPVNLN--YDAQLSKISEIKENYD------------ELLTRYRELEGKFLESQAEV 842

  Fly   734 EQLKNFDAKNKDLANKMDQAIRLANERQNIHQEEL 768
            |:||||.....|..:.:..:..|...:..|..:.|
pombe   843 EELKNFQKPLVDTGSSIHSSPGLQQSKFIIRNDSL 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsc1NP_477415.1 Hamartin 3..715 CDD:282270 144/825 (17%)
KASH_CCD 736..915 CDD:291334 8/33 (24%)
tsc1NP_593028.1 TTKRSYEDQ <608..830 CDD:287216 46/309 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004719
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15154
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.100

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