DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and Crocc

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:XP_017448904.1 Gene:Crocc / 313663 RGDID:1305364 Length:2015 Species:Rattus norvegicus


Alignment Length:2003 Identity:558/2003 - (27%)
Similarity:987/2003 - (49%) Gaps:251/2003 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 DPSALLRQNQELRQRLADESHSYRRRLDTYKQAQHNQANLVSRLQSKIQQYRQRCSDLEERMHET 151
            :|..|:||:.|||::|.:|..||||:|..|::.|..||.||.|||:||.||:::||::|:::.| 
  Rat   135 EPRGLVRQSVELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQAKILQYKKQCSEMEKQLLE- 198

  Fly   152 IKPTAGVGPKLTTGPTNQVLCSTSLTLGQSSLPCSSSLDSPPPSCSRDYVDDVLVTGGGAGAAEL 216
                                  .|..|.|..|..:..        |:| :|..|:          
  Rat   199 ----------------------RSTELEQQRLRDTEH--------SQD-LDRALL---------- 222

  Fly   217 CRKLEEEHQRCEQIVAQNSALRQQLEESNRTNEALTNDLQKLTNDWASLRDELLIKEDEFKEEEQ 281
              :||||.||...:...|..||:||:::|..|:.|:.|:.|:|:||.....||..:|..::.||:
  Rat   223 --RLEEEQQRSASLAQVNDMLREQLDQANLANQTLSEDICKVTSDWTRSCKELEQREATWRREEE 285

  Fly   282 AFKDYYNSEHNRLLKMWREVVAVKRSFKEMQTAMKAEVAKMGQEINCVGKDINGSNATVAFAVQQ 346
            :|..|::|||:|||.:||:|:.::|...|::...:.::.::|.|:....:.:......::.::|:
  Rat   286 SFNAYFSSEHSRLLLLWRQVMGLRRMASEVKMGTERDLLQLGGELVRTSRAVQEVGLGLSASLQR 350

  Fly   347 AKRAADDELKQSQRSNDELQNQ----------LATLKVQYE------SAR------------HEI 383
            |:..|:..|::.:....:|:.|          ||.|:||.:      |||            ::.
  Rat   351 AESRAEAALEKQKLLQAQLEEQLRAKLLREKDLAQLQVQSDLDKADLSARVTELALSVEHLQNQN 415

  Fly   384 MERDQRLLELMNQLKKLEDRCAQAESQAALASRYSDEIERLNNSMREIAQAVVQDAE------NA 442
            .|:||....|.::|:.||.  .:.:.|..|.   :::.|.|..::|::|||.:.|.|      |:
  Rat   416 TEKDQVNRTLSDKLEALES--LRLQEQTTLD---TEDGEGLQQTLRDLAQAALSDTESGVQLSNS 475

  Fly   443 DREADAEVTGGVMQHMHLTRDAASVVGGAGGAGST-----AGGGGKSPRRNSTRASQAFAEGTIS 502
            :|.||             |.| .|..|..|....|     :.|.|:||||..:.|..  ...|::
  Rat   476 ERTAD-------------TSD-GSFRGLFGQRTPTPPRHSSPGRGRSPRRGLSPACS--DSSTLT 524

  Fly   503 AVQAALHKYQLALHDMQVKFQNTSETLRTTKAQLETSEGTKQLLTTKMQQL-------------- 553
            .:.:||||.||.:.||:.:::.:.:.|.:.:.||..|||.::.|..::|:|              
  Rat   525 LIHSALHKRQLQVQDMRGRYEASQDLLGSVRKQLSDSEGERRGLEEQLQRLRDQTATSVQAQEDA 589

  Fly   554 ---TEKLDSSNSKLSELLQERESLQRGLDDIRVQKQQSEMGRADINSAFENLSSDYEKMQLNCGK 615
               .::|.|:|..||   :|:.:|...|   :|.:||:           |:|..:.||:|....:
  Rat   590 QREAQRLRSANEILS---REKGNLSHSL---QVAQQQA-----------EDLRQELEKLQAAQEE 637

  Fly   616 LQKRIDSMEEDKKAVELEIQRILKDKNITELNLRSEEDRSSRLREETISLREELNRVSLNRDLLE 680
            |:::...:|:.::....|..|..::...:...|...|.:.|.|.:|.:.:||.|:...|.||:|:
  Rat   638 LRRQHTQLEDQQEDTVQEGARARRELERSHRQLEQLEVKRSGLTKELVEVREALSCAVLQRDVLQ 702

  Fly   681 QQRIESDNLINLLEKQKSDLEYDLDKLLLEKCDLQEKHEKLSNNSCSTSDELKSVQNCLQEAQEE 745
            .::.|....:...|..::.||..:.||..|:..|::...|:|..:.|.:.:...:...:.:.:||
  Rat   703 TEKAEVAEALTKAEAGRAQLELSVTKLRAEEASLRDSLSKMSALNESLAQDKLELNRLIAQLEEE 767

  Fly   746 RKKL--RIQSVDQCNEIGELKKELAILDKARLELETDNLSAGEKLKCLQLEKEKILQDLACVTRD 808
            :..|  |.|..:....:...|:|.  |::.|||.|.:.......|...:..:|.:.|.:..:..:
  Rat   768 KAALLGRQQQAEHATSLAVEKQER--LEQLRLEQEVERQGLEGSLCVAEQAREALGQQILVLRSE 830

  Fly   809 RGDIHNQLTAMCRKKEALNEELMRTRQRLEQTTETNSRLNRNLEEMVKDVEEKQVVIDLHEKDTH 873
            |..:..|:..:.|:....::||.:..:..::..|...|..|..|.|.|:.....|.:...|::..
  Rat   831 RSHLQEQVAQLSRQLNGRDQELDQALRESQRQVEALERAAREKEAMAKERAGLAVQLAAAEREGR 895

  Fly   874 RLNELLAALRSEKESLESVLFDTNTSLEATEERRSQLERDLQEALVREESLKNHVARLQKELEQC 938
            .|:|....||.|||:|||.|||....|...|.||.|||.|.|..|:.:|:|...:|.|::::...
  Rat   896 TLSEETIRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALLLAKETLTGELAGLRQQVTAT 960

  Fly   939 QRKA---QETKTQ-LLNAARAAESDFNQKIA----NLQAC--AEEAAKRHGEEILQLRNALEKRM 993
            :.||   :|..|| |:.|.|..::...::.|    :||..  .:|||.|   |:...|..|:.::
  Rat   961 EEKAALDKELMTQKLVQAERETQASLREQRAAHEEDLQRLQREKEAAWR---ELQAERAQLQGQL 1022

  Fly   994 QQALQALQTAKDDEIEKLQERLATLQAHLESLVQQHEEALIRAESEKQQALLIAHRDKQAVAERL 1058
            ||..:.|....:.|.|:|.|.:|.||       |:.:|.|:.|||||||||.:...:|.|::|:|
  Rat  1023 QQEREELLARMEAEKEELSEEIAALQ-------QERDEGLLLAESEKQQALSLKESEKTALSEKL 1080

  Fly  1059 EAVSRDLKTEQESLDRSRREANARDEKQRAAIAQLKDEMVQMRTKEEEHKIKLEECIRKQELQLS 1123
            ......|......::|.:|:|.:|.|:.|..:..|..|:..:|.:.||......:.:::.:.|..
  Rat  1081 MGTRHSLAAISLEMERQKRDAQSRQEQDRNTVNALTSELRDLRAQLEEATAAHAQQVKELQEQTG 1145

  Fly  1124 SLREERESLCRVSEELKMEIRLKEDRMESTNNELQDALRKSKEGEGFIDSLRKELTDCRRQLADS 1188
            :|..:||:..|.:|||:.::||.||..:....||.:|.||.::.:...::.|:|.::.||.|::.
  Rat  1146 NLGRQREACMREAEELRTQLRLLEDTRDGLRRELLEAQRKVRDSQDSSEAHRQEASELRRSLSEG 1210

  Fly  1189 NIERDKYSGSNKELRDHVKRVESAKREQARAIEEALQKISNLEDTKNSLENERTRLSTILKETEN 1253
            ..||:....||:|||..||:.||.:.....|.|:..||::.||:.:.|:..|...|...|:|.|.
  Rat  1211 TKEREALRRSNEELRTAVKKAESERISLKLANEDKEQKLALLEEARMSVAKEAGELRASLQEVER 1275

  Fly  1254 HFTKTTQDLNATKAQLQKAQVEFAQKDEG--GKE---LQCKLVAEVELKERAQQELCQIKKQLSD 1313
            ...:..::|     |..:.|::....|.|  |:|   ||.:|......::.:::|:..:::::..
  Rat  1276 SRLEARREL-----QELRRQMKTLDSDNGRLGRELADLQSRLALGERTEKESRREVLGLRQKVLK 1335

  Fly  1314 LEANLCATRQELGRARCQNNQEEHRFHAREQELAQRLEEGRGREKRLEDQKHNLEVCLADATQQI 1378
            .|::|.|.:|||..::.:..::|..|.|||:.|...|||.||.||:|.|...:||:.|.....:.
  Rat  1336 GESSLEALKQELQGSQRKLQEQEAEFRARERGLLGSLEEARGAEKKLLDSARSLELRLEGVRAET 1400

  Fly  1379 QELKARLGGAEGRIRALDEQLSCVELHKRDTEQKLSSVVHTLRRIAGIQVDGSVNLSHRLLSPSR 1443
            .||..||..||||.:.|:.:|:.||..:|..|.:|..:...|||..|:   |.|:     .||:|
  Rat  1401 SELGLRLSAAEGRAQGLEVELARVEAQRRVAEAQLGGLRSALRRGLGL---GRVS-----SSPAR 1457

  Fly  1444 RFSPSRSCGD---------YDNRSTSQCPDGPI------DVDPDLVRKGVRNLMHQVAQLEREKD 1493
            . :|:...||         |..||....| ||:      |:||:.||..:|:.:.::...:||:|
  Rat  1458 E-APAGGSGDGLSSPSPLEYSPRSQPPSP-GPVASPAPPDLDPEAVRDALRDFLQELRSAQRERD 1520

  Fly  1494 DYKSQLGAAKKQLQDAADQQLRCDAKLGKLQAMLRNLQEEKSNLETDRKMKISAIQA----LEEK 1554
            :.:.|.....:||.:...::....::..:||..:  .:.|::....||  ::|..||    .||.
  Rat  1521 ELRVQTSTLSQQLAEMEAERDHAASRAKQLQKAV--AESEEAWRSADR--RLSGAQAELALQEES 1581

  Fly  1555 LKHRNDECQMLRERLAQTEMQLAATSEENGQNEERLEKSRQQCSKLDNEKRQLQEELAKVEGRAS 1619
            ::....||:...:::|..|..|.||..|...::|::.|.:....||:::||:|:|.|...|.|:.
  Rat  1582 VRRSRRECRATLDQMAVLERSLQATESELRASQEKVNKMKATEVKLESDKRRLKEVLDASESRSI 1646

  Fly  1620 KLELQRVAMEGDLTRLQMALQEKDCSIRQMAERLENQNRALTQLEDRCTALKSTVDQLKERLQKS 1684
            ||||||.|:||:|.|.::.|.:::...:.:.:|:::..|.:...|.:...|:.||::|...|.|.
  Rat  1647 KLELQRRALEGELQRSRLGLGDREAHAQALQDRVDSLQRQVADSEVKAGTLQLTVERLSGALAKV 1711

  Fly  1685 AVSETQLRGEIKTLQKELSEQGHCSQANEDKLKLVQKSLQTAENEKRILTERLDSAQTNLNELRR 1749
            ..||..||.::::|...|::......:::||...:||:|.|.|:::::|.||||:|:..|:|.||
  Rat  1712 EESEGTLRSKVQSLTDALAQSSASLTSSQDKNLYLQKALSTCEHDRQVLQERLDAARQALSEARR 1776

  Fly  1750 SQQAQLDGNQRLQEQVTDLEVQRSALESQL----RIAKWNQESGGDKDLTNGNGGGNGEEELSRQ 1810
            ...:..:..|.|:.::.:||:||...|.||    ::.:..||               ||....|.
  Rat  1777 QSSSLGEQVQTLRGELANLELQRGDAEGQLQQLQQVLRQRQE---------------GEAVALRS 1826

  Fly  1811 LKSSQREKSELRSKLQTLQDKVKQLECDR-----------KSKFSGGNAYDRAEKSNSFYGGAAE 1864
            ::..|.|:..|:.:|.:||..:.|||.::           |.:.:.....|:.|:..      ..
  Rat  1827 VQKLQEERRLLQERLGSLQRALAQLEAEKRELERSALQLDKDRVALRKTLDKVEREK------LR 1885

  Fly  1865 SGEFDSNRYDVGGGNAGGGSFNCGLDHSVIEQETRDLRLKVRRLETLLAEKESELARCKARMNDS 1929
            |.| |:.|.:...|..........||.:..:|:.:.|..:|  :|.|  |:.....:.:|   |.
  Rat  1886 SHE-DTLRLNAERGRLDRTLTGAELDLAEAQQQIQHLEAQV--VEVL--ERNHSPVQVEA---DE 1942

  Fly  1930 AKCHDGLDGDRYRSAQMHAEKLLDAREQSHRQQVLRLENQIS--MLREQLAQE 1980
            .......:.:|.||||:..|:.|:|||::|||:|..||.|:.  .|||....|
  Rat  1943 QHLELQQEVERLRSAQVRTERTLEARERAHRQRVSGLEEQVQGPFLREGAGME 1995

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694 67/221 (30%)
Smc 555..1384 CDD:224117 236/845 (28%)
SMC_prok_B 991..>1779 CDD:274008 243/811 (30%)
CroccXP_017448904.1 CCDC158 <55..>660 CDD:318193 164/606 (27%)
Rootletin 158..335 CDD:405685 67/220 (30%)
Smc 617..1366 CDD:224117 211/776 (27%)
Smc 1093..1882 CDD:224117 235/822 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 542 1.000 Domainoid score I253
eggNOG 1 0.900 - - E1_2CMIF
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16811
Inparanoid 1 1.050 659 1.000 Inparanoid score I735
OMA 1 1.010 - - QHG46615
OrthoDB 1 1.010 - - D48753at33208
OrthoFinder 1 1.000 - - FOG0001653
OrthoInspector 1 1.000 - - oto96446
orthoMCL 1 0.900 - - OOG6_106109
Panther 1 1.100 - - LDO PTHR23159
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3005
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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