Sequence 1: | NP_001287497.1 | Gene: | Root / 42860 | FlyBaseID: | FBgn0039152 | Length: | 2048 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038962796.1 | Gene: | Cep250 / 311573 | RGDID: | 1562262 | Length: | 2428 | Species: | Rattus norvegicus |
Alignment Length: | 2558 | Identity: | 561/2558 - (21%) |
---|---|---|---|
Similarity: | 993/2558 - (38%) | Gaps: | 734/2558 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 65 MSPGPPGAGGGGGGGVSGGGSGDPSALLRQNQE----LRQRLADESHSYRRRLDTYKQAQHNQAN 125
Fly 126 LVSRLQSKIQQYRQRCSDLEERMHETIKPTAGVGPKLTTGPTNQVLCSTSLTLGQSSLPCSSSLD 190
Fly 191 SPPPSCSRDYVDDVLVTGGGAGAAELCRKLEEEHQRCEQIVAQNSALRQQLEESNRTNEALTNDL 255
Fly 256 QKLTNDWASLRDELLIKEDEFKEEEQAFKDYYNSEHNRLLKMWREVVAVKRSFKEMQTA------ 314
Fly 315 -MKAEVAKM-GQEINCVGKDINGSNATVAFAVQQAKRAADDELKQSQRSNDELQNQLATLKVQYE 377
Fly 378 SARHEIMERDQRLLELMNQ--LKK--LEDRCAQAESQAALASRYSDEIERLNNSMR---EIAQAV 435
Fly 436 VQDAENADREA----DAEVTGGVMQHM--HLTRDAASV-----VGGAGGAGSTAGGGGKSPRRNS 489
Fly 490 TRASQAFAEGTISAVQAALHKYQLALHDMQVKFQNTSETLRTTKAQLETSEGTKQLLTTKMQQLT 554
Fly 555 EKLDSSNSKLSELLQERESLQRGLDDIRVQKQQSEMGRADINSAFENLSSDYEKMQLNCGKLQKR 619
Fly 620 IDSMEEDKKAVELEIQRILKDKNITELNLRSEEDRSSRLREETISLREELNRVSLNRDLLEQQRI 684
Fly 685 ESDNLINLLEKQKSDLEYDLDKLLLEKCDLQEKHEKL-SNNSCSTSDELKSVQNCLQEAQEERKK 748
Fly 749 L-RIQSVDQCN-----EIGELKKELAILDKARLELETDNLSAGE-------KLKCLQLEKEKILQ 800
Fly 801 DLACVTRDRGDIHNQLTAMCRKKEALNEELMRTRQRLEQTTETNSRLNRNLEEMVKDVEEKQVVI 865
Fly 866 DLHEKDTHRLNELLAALRSEKESLESVLFD----------TNTSLEA------------------ 902
Fly 903 ------TEERRSQLERD------------------------------LQEALVREESLKNHVARL 931
Fly 932 QKELEQCQR---------KAQETKTQLLNAARAAE-SDFNQKIANLQACAEEAAKRHGEEILQLR 986
Fly 987 NALEKRMQQALQALQTAKDD-EIEKLQERLAT--LQA-------HLESLVQQHEEAL-------- 1033
Fly 1034 -IRAESEKQQALLIAHRDKQAV-----------AERLEAVSRDLKTEQESLD------------- 1073
Fly 1074 ------RSRREANARDEKQRAAIAQ----LKDEMVQMRTKEEEHKIKLEECIRKQELQLSSL--R 1126
Fly 1127 EERESLC---RVSEELKMEIRLKEDRME-----------------STNNELQDAL---------- 1161
Fly 1162 ---------------------RKSKEG-----------------------------EGFIDSLRK 1176
Fly 1177 -----------------ELTDCRRQLADSNIERDKYSGS----NKELRD---------------- 1204
Fly 1205 -------------------------HVKRVESAKREQARA---IEEALQKISNLEDTKN-SLENE 1240
Fly 1241 RTRLSTILKETE----------NHFTKTTQDLNATKAQLQKAQVEFAQKDEGGKELQ-------- 1287
Fly 1288 ---CKLVAEVELKERAQQELCQIKKQLSDLEANLCATRQELGRARCQ-----NNQE------EHR 1338
Fly 1339 FHAREQELAQRLEEGRGREKRLEDQKHNLEVCLA------------------------------- 1372
Fly 1373 --------DATQQIQELKARLGGAEGRIRALDEQL------------SCVELHK------RDTEQ 1411
Fly 1412 KLSSVVHTLRRIAGIQVDGSV----------NLSHRL------LSPSRRFSPSRSCGDYDNRSTS 1460
Fly 1461 QCPDGPI----------DVDPDLVRKGVRNLMHQVAQLEREKDDYKSQLG--------------A 1501
Fly 1502 AKKQLQDAADQ-QLRCDAKLGKLQ-------------AMLRNLQEEKSNLETDRKMKISAIQALE 1552
Fly 1553 EK----LKHRNDE-------CQMLRERLAQTEMQLAATSE-------ENGQNEERLEKSRQQCSK 1599
Fly 1600 L----DNEKRQLQEELAKVEGRASKLELQRVAME--------------GDLTRLQMALQEKDCSI 1646
Fly 1647 RQMAERLENQNRALTQLEDRCTALKSTVDQLKERLQKSAVSETQLRGEIKT-----------LQK 1700
Fly 1701 ELSEQGHCSQANEDKLKLVQKSL----------------QTAENEKRILTERLDSAQTNLNE--- 1746
Fly 1747 ----LRRSQQAQLDGNQR-------------------LQEQVTDLEVQRSAL-ESQLRIAKWNQE 1787
Fly 1788 SGG-DKDLTNGNGGGNGEEELSRQLKSSQREKSELRSKLQTLQDKVKQLECDRKSKFSGGNAYDR 1851
Fly 1852 AEKSNSFYGGAAESGEFDSNRYDVGGGNAGGGSFNCGLDHSVIEQETRDLRLKVRRLETLLAEKE 1916
Fly 1917 SELARCKARMNDSAKCHDG---------------LDGDRYRSAQMHAEKLLDARE---QSHRQQ- 1962
Fly 1963 -------------VLRLENQISMLREQLAQEAKRRQQYILRSSKANREMQHLRSTLGDSLRNVSQ 2014
Fly 2015 HPVDPHLLESESRRLDSAVSMSL 2037 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Root | NP_001287497.1 | Rootletin | 110..332 | CDD:291694 | 77/229 (34%) |
Smc | 555..1384 | CDD:224117 | 243/1188 (20%) | ||
SMC_prok_B | 991..>1779 | CDD:274008 | 243/1221 (20%) | ||
Cep250 | XP_038962796.1 | Rootletin | 39..214 | CDD:405685 | 75/220 (34%) |
SMC_prok_A | <240..596 | CDD:274009 | 77/368 (21%) | ||
Smc | 454..1160 | CDD:224117 | 159/725 (22%) | ||
SMC_prok_B | 844..1544 | CDD:274008 | 145/707 (21%) | ||
SMC_prok_B | 1256..2059 | CDD:274008 | 164/808 (20%) | ||
PRK11281 | 1904..>2295 | CDD:236892 | 82/424 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166340093 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D48753at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001653 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR23159 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X3005 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.950 |