DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and Cep250

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:XP_038962796.1 Gene:Cep250 / 311573 RGDID:1562262 Length:2428 Species:Rattus norvegicus


Alignment Length:2558 Identity:561/2558 - (21%)
Similarity:993/2558 - (38%) Gaps:734/2558 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 MSPGPPGAGGGGGGGVSGGGSGDPSALLRQNQE----LRQRLADESHSYRRRLDTYKQAQHNQAN 125
            |..|.||.            :..|.:|....:|    |:|::|....:..|:|...::||..||.
  Rat     1 METGSPGL------------NMKPQSLQLVLEEQVLALQQQMAQNQAASWRKLKNSQEAQKRQAT 53

  Fly   126 LVSRLQSKIQQYRQRCSDLEERMHETIKPTAGVGPKLTTGPTNQVLCSTSLTLGQSSLPCSSSLD 190
            ||.:||:|:.|||..|.|||:|    ::.|.|:.|:..                       .|::
  Rat    54 LVRKLQAKVLQYRSWCQDLEKR----LEATGGLIPQRW-----------------------ESVE 91

  Fly   191 SPPPSCSRDYVDDVLVTGGGAGAAELCRKLEEEHQRCEQIVAQNSALRQQLEESNRTNEALTNDL 255
            .|                   ...:|..:||||.||||.:|..|:.||..:|:::..|:||..|:
  Rat    92 EP-------------------NLEQLLIRLEEEQQRCESLVEVNTELRLHMEKADVVNKALQEDV 137

  Fly   256 QKLTNDWASLRDELLIKEDEFKEEEQAFKDYYNSEHNRLLKMWREVVAVKRSFKEMQTA------ 314
            :|||.||:..||||:.||.:::.|::.||.|...||.|||.:|||||..:|.|.:|::|      
  Rat   138 EKLTVDWSRARDELMRKESQWRMEQEFFKGYLRGEHGRLLSVWREVVTFRRHFLKMKSATDRDLT 202

  Fly   315 -MKAEVAKM-GQEINCVGKDINGSNATVAFAVQQAKRAADDELKQSQRSNDELQNQLATLKVQYE 377
             :|||.|:: |..:.|              .::...||...:...|.||::....||..|..:.:
  Rat   203 ELKAEHARLSGSLLTC--------------CLRLTLRAQSRDSSGSGRSDESEPAQLLLLVAKTQ 253

  Fly   378 SARHEIMERDQRLLELMNQ--LKK--LEDRCAQAESQAALASRYSDEIERLNNSMR---EIAQAV 435
            :...|..|:.|.|::|.:|  |:|  |:||..:..:....:.:.:.:.|.:..::|   ||.:  
  Rat   254 ALEKEAHEKSQELMQLKSQGDLEKAELQDRVTELSALLTQSQKQNKDYEEMVKALRGTMEILE-- 316

  Fly   436 VQDAENADREA----DAEVTGGVMQHM--HLTRDAASV-----VGGAGGAGSTAGGGGKSPRRNS 489
            ...||..:.||    :|:.....:||:  .:|:..|||     |....|:.::.    :|...:.
  Rat   317 TNHAELMEHEASLSRNAQEEKLSLQHVIKDITQALASVEEEDTVTQTPGSENSL----QSDYNDL 377

  Fly   490 TRASQAFAEGTISAVQAALHKYQLALHDMQVKFQNTSETLRTTKAQLETSEGTKQLLTTKMQQLT 554
            ::.........::.|.:.|.:.|.|:.|::.:.....|.:...:.|....|...:.|..::|:||
  Rat   378 SQFDSQDPNKALTLVHSVLTRRQQAVQDLRQQLSGCQEAMSFLQQQHNQWEEEGKALRERLQKLT 442

  Fly   555 EKLDSSNSKLSELLQERESLQRGLDDIRVQKQQSEMGRADINSAFENLSSDYEKMQLNCGKLQKR 619
            .:.|:       |..:...||..:|.:..:::..:..|.::....|.|..:..:::....:||.:
  Rat   443 GERDA-------LAGQTVDLQGEVDSLSKERELLQTARGELQQQLEVLEQEAWRLRRVNVELQLQ 500

  Fly   620 IDSMEEDKKAVELEIQRILKDKNITELNLRSEEDRSSRLREETISLREELNRVSLNRDLLEQQRI 684
            .||.:.:|...:.|:...::::...:..|...|.:.|....|.|:|||.|....|..:||:|::.
  Rat   501 GDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELIALREALESSRLAGELLKQEQE 565

  Fly   685 ESDNLINLLEKQKSDLEYDLDKLLLEKCDLQEKHEKL-SNNSCSTSDELKSVQNCLQEAQEERKK 748
            |....:...|:...:|....:.|..|..||:....|| :.|.....|::...|..||..||.:..
  Rat   566 EVAAALARAEQSIVELSSSENSLKAEVADLRAAAVKLGALNEALALDKVALNQQLLQLEQENQSM 630

  Fly   749 L-RIQSVDQCN-----EIGELKKELAILDKARLELETDNLSAGE-------KLKCLQLEKEKILQ 800
            . |:::.:|..     ::.|.::....|.:.:..|||....|.|       :|:..:.|||::.:
  Rat   631 CSRVEAAEQLRSALQVDLAEAERSREALWEEKTHLETQLRKAEETGAELQAELRGAREEKEELKE 695

  Fly   801 DLACVTRDRGDIHNQLTAMCRKKEALNEELMRTRQRLEQTTETNSRLNRNLEEMVKDVEEKQVVI 865
            .|       .:.|:|       :||...:|.:..|..|:..|..:|..:..|.:|::....:|.:
  Rat   696 KL-------NEAHHQ-------QEAATAQLQQLHQDAERQEEALARAGQEKEALVRERAALEVRL 746

  Fly   866 DLHEKDTHRLNELLAALRSEKESLESVLFD----------TNTSLEA------------------ 902
            ...|:|...|.|.:..|||.||.||..||:          |.:.||.                  
  Rat   747 QAVERDRQDLAEQVLGLRSAKEQLEGNLFEAQQQNSVIQVTKSQLEVQIQTIIQAKEVIQGEVKC 811

  Fly   903 ------TEERRSQLERD------------------------------LQEALVREESLKNHVARL 931
                  ||...::.|||                              |||...:|.:|...  :|
  Rat   812 LKLELDTERSHAEQERDAVARQLAQAEQEGQAALERQKVAHEEEVNRLQEKWEKERALLQQ--KL 874

  Fly   932 QKELEQCQR---------KAQETKTQLLNAARAAE-SDFNQKIANLQACAEEAAKRHGEEILQLR 986
            .|.||..:|         :.|.|:|:.|.|.|..| :..:..:..:|...|:......|.:||  
  Rat   875 DKTLETLERERTELEMKLREQHTETEALRAQREEERTQADSALYQMQLETEKERVSLLETLLQ-- 937

  Fly   987 NALEKRMQQALQALQTAKDD-EIEKLQERLAT--LQA-------HLESLVQQHEEAL-------- 1033
              .:|.:..|.|.|:..:.| :::||:|:..|  |||       .|:..:|||.:.|        
  Rat   938 --TQKELADASQQLERLRQDMKVQKLKEQETTGMLQAQLRGAQQELKEAIQQHRDDLAAFQKDKI 1000

  Fly  1034 -IRAESEKQQALLIAHRDKQAV-----------AERLEAVSRDLKTEQESLD------------- 1073
             ::.:.|...:.|:.|.|.|.:           |:....:.::|:.|:.||.             
  Rat  1001 DLQKQVEDLTSQLVTHNDSQRLVKQEIEEKVREAQECSRIQKELEKEKASLTLSLVEKEKRLLVL 1065

  Fly  1074 ------RSRREANARDEKQRAAIAQ----LKDEMVQMRTKEEEHKIKLEECIRKQELQLSSL--R 1126
                  |.|...:.|.:.|.|...|    ::.|:::...||:|......|....:||:.|.:  |
  Rat  1066 QEADSVRQRELVSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRIAER 1130

  Fly  1127 EERESLC---RVSEELKMEIRLKEDRME-----------------STNNELQDAL---------- 1161
            :.|.||.   ..:.:|::::|..|.::|                 |..:.||.||          
  Rat  1131 QVRASLWAQEAKAAQLQLQLRSTEAQLEALVAEQQPENQAQAQLRSLYSVLQQALGSACERRPEL 1195

  Fly  1162 ---------------------RKSKEG-----------------------------EGFIDSLRK 1176
                                 |..|.|                             :...|.::|
  Rat  1196 RGGGDSVPTPWGSDPDQNGASRLLKRGPLLTALSAEAVALALQKLHQDLWKAQQARDDLRDQVQK 1260

  Fly  1177 -----------------ELTDCRRQLADSNIERDKYSGS----NKELRD---------------- 1204
                             ||.|.:|||:.|..|:.|:.|.    ..||||                
  Rat  1261 LVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGKQNSLESELRDLHETMASLQSRLRQAE 1325

  Fly  1205 -------------------------HVKRVESAKREQARA---IEEALQKISNLEDTKN-SLENE 1240
                                     |::...:..|.||.|   :||.|:...:....|| .:|:|
  Rat  1326 LQKMEAQNDRELLQASKEKLSAQVEHLQACVTEARAQASAAGVLEEDLRTARSALKLKNEEIESE 1390

  Fly  1241 RTRLSTILKETE----------NHFTKTTQDLNATKAQLQKAQVEFAQKDEGGKELQ-------- 1287
            |.|...:.::.|          .:.|...|.|:..:.:::..|.| .|:.|..:|:|        
  Rat  1391 RERAQALQEQGELKVAQGKALQENLTLLAQTLSNREREVETLQAE-VQELEKQREMQKAALELLS 1454

  Fly  1288 ---CKLVAEVELKERAQQELCQIKKQLSDLEANLCATRQELGRARCQ-----NNQE------EHR 1338
               .|...||:|::...|||.|.:..|..|...:....|:|...|.|     |::|      ||:
  Rat  1455 LDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRTALEHQ 1519

  Fly  1339 FHAREQELAQRLEEGRGREKRLEDQKHNLEVCLA------------------------------- 1372
            ....||: ||.:|..||:.:.|:.|...|| |||                               
  Rat  1520 LLDLEQK-AQVIESQRGQIQDLKKQLGTLE-CLALELEESHRKVEGQQKVITELEGQRELQRVAL 1582

  Fly  1373 --------DATQQIQELKARLGGAEGRIRALDEQL------------SCVELHK------RDTEQ 1411
                    :.:|::|...::|...|.....|.::|            ...||.|      :|.|:
  Rat  1583 THLTLDLEERSQELQTQSSQLHELENHSTRLAKELQERDQEVMSQRQQIEELQKQKEQLTQDLER 1647

  Fly  1412 KLSSVVHTLRRIAGIQVDGSV----------NLSHRL------LSPSRRFSPSRSCGDYDNRSTS 1460
            |...:|....||..::...::          .:.|.|      |:...:....|:   .|.:|.|
  Rat  1648 KGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERGQELASQWQLMQERA---EDGKSPS 1709

  Fly  1461 QCPDGPI----------DVDPDLVRKGVRNLMHQVAQLEREKDDYKSQLG--------------A 1501
            :...|.:          :.:.:..::.::.|...:.|||::......::|              .
  Rat  1710 KAQRGSLEHLKLILRDKEKEVECQQERIQELQEHMGQLEQQLQGLHRKVGETSLLLTHREQETAT 1774

  Fly  1502 AKKQLQDAADQ-QLRCDAKLGKLQ-------------AMLRNLQEEKSNLETDRKMKISAIQALE 1552
            .:::||:|.:| :||.....|:|:             ..||..|::....|...|.|.||:||..
  Rat  1775 LQQRLQEAKEQGELREQVLQGQLEEAQRALAQRDHELEALRQEQQQTRGQEESMKQKTSALQAAL 1839

  Fly  1553 EK----LKHRNDE-------CQMLRERLAQTEMQLAATSE-------ENGQNEERLEKSRQQCSK 1599
            |:    ||.|..|       .|.|:|.|.....|:.|..|       |:.::|:.:...:|:|::
  Rat  1840 EQAHVTLKERQGELEEHRGQVQRLQEELIVEGRQVRALEEVLGDLRAESREHEKTVLALQQRCAE 1904

  Fly  1600 L----DNEKRQLQEELAKVEGRASKLELQRVAME--------------GDLTRLQMALQEKDCSI 1646
            .    :.|.|.||:...:.:...::.|.:..|:.              |....||.||.:...::
  Rat  1905 QAQEHEAEARTLQDSWLQAQATLAEQEQELEALRAENQYSRQQEEAAFGQAEALQEALSKAQATL 1969

  Fly  1647 RQMAERLENQNRALTQLEDRCTALKSTVDQLKERLQKSAVSETQLRGEIKT-----------LQK 1700
            ::..:||..|......||.....|::|:|..:.|.::...:.....|||:|           ||:
  Rat  1970 QEKEQRLLEQAELSCTLEASTATLQATLDTCQARARQLEEALRVREGEIQTQALQHQEAMQHLQQ 2034

  Fly  1701 ELSEQGHCSQANEDKLKLVQKSL----------------QTAENEKRILTERLDSAQTNLNE--- 1746
            ||.::....:..:::.:|::|::                |..|.|.|.|.|.|...|..:.:   
  Rat  2035 ELCQKEEDLRQQDEQRQLLEKAVAQRSQENGIQEKQSLEQEKEEETRGLLESLKELQLTVAQKEE 2099

  Fly  1747 ----LRRSQQAQLDGNQR-------------------LQEQVTDLEVQRSAL-ESQLRIAKWNQE 1787
                ||.:||.|   ||.                   |.:|  |||..::|| :::.|..:|.::
  Rat  2100 EILMLREAQQRQ---NQEASSPSHRSFPAEKPSLQLLLAQQ--DLERLQNALRQTEAREIEWREK 2159

  Fly  1788 SGG-DKDLTNGNGGGNGEEELSRQLKSSQREKSELRSKLQTLQDKVKQLECDRKSKFSGGNAYDR 1851
            :.| ...|.......:..:|::..|::|..|:...:.:||  ::.|...:...:.:..|.::..|
  Rat  2160 AQGLALSLAQSKASISSLQEIAMFLQASVLERESEQQRLQ--EELVLSRQALEEQQSRGPHSSSR 2222

  Fly  1852 AEKSNSFYGGAAESGEFDSNRYDVGGGNAGGGSFNCGLDHSVIEQETRDLRLKVRRLETLLAEKE 1916
            |::... .|...|.||........|.|                  |...||.::.||:..:||.|
  Rat  2223 ADQGPK-AGQDTEPGEVIEAEPSPGVG------------------EKEQLRQRLERLQQAVAELE 2268

  Fly  1917 SELARCKARMNDSAKCHDG---------------LDGDRYRSAQMHAEKLLDARE---QSHRQQ- 1962
            .:.::        .:||:.               |..|..|:::..:   |:|||   .|..|| 
  Rat  2269 VDRSK--------LQCHNAQLRTTLEQVERERRKLKRDSLRASRAGS---LEARETMNSSPTQQD 2322

  Fly  1963 -------------VLRLENQISMLREQLAQEAKRRQQYILRSSKANREMQHLRSTLGDSLRNVSQ 2014
                         ::.|:.::::||.|||.|.|:||.||.||.:.:||:..|..:|..||..|:|
  Rat  2323 GRGSQRGSSDSMLMVELQREVALLRAQLALERKQRQDYIARSVQTSRELAGLHHSLSHSLLTVAQ 2387

  Fly  2015 HPVDPHLLESESRRLDSAVSMSL 2037
            .| :..:||:|:::||.:::.||
  Rat  2388 AP-EATVLEAETKKLDESLNQSL 2409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694 77/229 (34%)
Smc 555..1384 CDD:224117 243/1188 (20%)
SMC_prok_B 991..>1779 CDD:274008 243/1221 (20%)
Cep250XP_038962796.1 Rootletin 39..214 CDD:405685 75/220 (34%)
SMC_prok_A <240..596 CDD:274009 77/368 (21%)
Smc 454..1160 CDD:224117 159/725 (22%)
SMC_prok_B 844..1544 CDD:274008 145/707 (21%)
SMC_prok_B 1256..2059 CDD:274008 164/808 (20%)
PRK11281 1904..>2295 CDD:236892 82/424 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340093
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D48753at33208
OrthoFinder 1 1.000 - - FOG0001653
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23159
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3005
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.950

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