DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and lfi-1

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:NP_001371014.1 Gene:lfi-1 / 180771 WormBaseID:WBGene00022500 Length:2401 Species:Caenorhabditis elegans


Alignment Length:2414 Identity:471/2414 - (19%)
Similarity:922/2414 - (38%) Gaps:568/2414 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QSATASRLPFSRSQRGRDPSASGASVSASVAGGLTPRMMSPGPPGAGG-----------GGGGGV 80
            :|:...:|..|.....|.......::....|....|...|||.....|           .|....
 Worm   100 RSSRKDKLKMSTHDDTRSSGGGDGTIHIPSADAKEPTPESPGSRSNYGEFYWDEYSRDTSGENNY 164

  Fly    81 SGGGSGDPSALLRQNQE------LRQRLADESHSYRRRLDTYKQAQHNQANLVSRLQSKIQQYRQ 139
            ....|.|...||..:..      ...|..|:.:.:|:|:|...:.|...:.:::.||:|:.:||:
 Worm   165 HHTSSFDDDLLLEIDSSRGAAVARLDRTQDDLNKFRQRIDNNVEQQREYSEMMAALQNKVHEYRK 229

  Fly   140 RCSDLEERMHETIKPTAGVGPKLTTGPTNQVLCSTSLTLGQSSLPCSS-SLDSPPPSCSRDYVDD 203
            ..::||.||       .|...::...||:.|:...:...|.:.:...: .|.||    :|...:.
 Worm   230 HIAELEGRM-------VGARNRMLDDPTSNVMIFDNYDPGNTYITNHNVELWSP----ARGKRET 283

  Fly   204 VLVTGG----------------GAGAA-----------------ELCRKLEEEHQRCEQIVAQNS 235
            :|..||                |:|.|                 |:..:|:||.:|.::...|..
 Worm   284 ILGGGGAPGLTTVNVHAGAGYSGSGVAGYGGGVQAMVGDPNANYEMIARLDEERRRSDEYRMQWE 348

  Fly   236 ALRQQLEESNRTNEALTNDLQKLTNDWASLRDELLIKEDEFKEEEQAFKDYYNSEHNRLLKMWRE 300
            ..||:.......|:.|..:.::..||   .:|    ||..|...|:....|.:.|..::|.:|.|
 Worm   349 NERQKSLSLEDENDRLRREFERYAND---SKD----KEKTFINRERNLAQYLSDEQRKMLDLWTE 406

  Fly   301 VVAVKRSFKEMQTAMKAEVAKMGQEINCVGKDINGSNATVAFAVQQAKRAADDELKQSQRSNDEL 365
            :..|::.|.:::|..:.::.|...|.....:::|..:...||:...........|:.....|...
 Worm   407 LQRVRKQFSDLKTHTEEDLDKQKAEFTRAIRNVNNISRNAAFSAGAGDGLGLYGLEDGGDVNRTT 471

  Fly   366 QNQLATLKVQYESARHEIMER--------DQRLLELMNQLKKLE---DRCAQAESQAALASRYSD 419
            .|        ||....|.::|        .....:|:.:|:|:.   .....||....|.::|.:
 Worm   472 NN--------YEKVFIETIKRMNGTGGAGSASSADLLEELRKIRGGGSSEGDAELHKELMTKYEE 528

  Fly   420 EIERL-------NNSMREIAQAVVQDAENADREADAEVTGGVMQHMH-LTRDAASVVGGAGGAGS 476
            .|||.       ::|.|:||:...:...|.::..:|:   |.::.:| :.:|:...|.|......
 Worm   529 SIERNIELESRGDDSQRKIAELEAELRRNREKLNEAQ---GALKKLHEMAQDSEKNVDGTVSIKR 590

  Fly   477 TAG-GGGKSPRRNSTRASQAFAEGTISAVQAALHKYQLALHDMQVKFQNTSETLRTTKAQLETSE 540
            |.. ..||:|...|.                       ||..::..|:|....::..:.:|:.:|
 Worm   591 TRSLSPGKTPLPPSE-----------------------ALRAVRNTFRNKDNDIQQLERKLKIAE 632

  Fly   541 GTKQLLTTKMQQLTEKLDSSNSKLSELLQERESLQRGLDDIRVQKQQ-------SEMGRADINSA 598
            ...:....|.:...|.....:.:.::..:|..:||:.:|:.....::       ||..|.....|
 Worm   633 SQVKEFLNKFENADEARRRLDKQFADAKREISNLQKSVDEAERNSRRTDDKLRASEAERVAAEKA 697

  Fly   599 FENLSSDYEKMQLNCGK-----LQKRIDSMEEDKKAVELEIQRILKDKNITELNLRSEE--DRSS 656
            .:.|..:..|:|.:..|     .:|..|.|:|...:::.|.:     ..|.|||.|.|.  ..::
 Worm   698 RKFLEDELAKLQASFQKSSTDDARKLRDEMDEHTNSIQEEFK-----TRIDELNRRVENLLRENN 757

  Fly   657 RLREETISLREELNRVSLNRDL-----LEQQRI-ESDNLINLLEKQKSDLEYDLDKLLLEKCDLQ 715
            ||:.|...|:::.      |||     ..|:|| |.:..|...:..:.:::.|||       ||:
 Worm   758 RLKSEVNPLKDKY------RDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLD-------DLR 809

  Fly   716 EKHEKLSNNSCSTSDELKSVQNCLQEAQEERKKLRIQSVD-------QCNEIGELKKELAILDKA 773
            ||::::..::.....||:..|.....|:::.|:::||..|       ....:.:::.:|....|.
 Worm   810 EKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKG 874

  Fly   774 RLELETDNLSAGEKLKCLQLEKEKILQDLACVTRDRGDIHNQLTAMCRKKEALNEELMRTRQRLE 838
            |.:||.:.....::|       :|:.|.::       |..:|:..:.|..:.|:..:...:.::.
 Worm   875 RQDLEKNGARNNDEL-------DKLRQTIS-------DYESQINLLRRHNDELDTTIKGHQGKIT 925

  Fly   839 Q-TTETNSR---------LNRNLEEMVKDVEEKQVVIDLHEKDTHRLNELLAALRSEKESLES-- 891
            . ..|.:||         ||:.|::..:|:..:::.:|   .|...|.|.:..|.:|.|.|.:  
 Worm   926 HLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLD---GDVQALKETIRKLENELEKLRNEN 987

  Fly   892 --------------------------VLFDTNTSLEATEERRSQLERDLQEALVREESLKNHVAR 930
                                      .|.||...|:.:.:...|||:|:::       ||..:|.
 Worm   988 KELVGKEARARDAANQQLSRANLLNKELEDTKQDLKHSTDVNKQLEQDIRD-------LKERLAN 1045

  Fly   931 LQK----------------------ELEQCQRKAQETKTQLLNAARAAES--------------- 958
            :.|                      ..:..:.:.....|..:.||...||               
 Worm  1046 IGKGGRISRDSTTGTDGGAFGDRSSVADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGDVI 1110

  Fly   959 ---------DFNQK----IANLQACAEEAAKR-----HGEEILQLR-NALEKRMQQALQALQTAK 1004
                     |...:    |.|.:...|...|.     |.:|:::.: ..:..|.::.|:.|:..|
 Worm  1111 HGRDGRDGRDAGNRGTHTITNTKERIERIEKNILDRYHDDELVEHKIREVNDRWKRELERLENEK 1175

  Fly  1005 DD---EIEKLQERLATL-------QAHLESLVQQHEEALIRAESEKQQALLIAHRDKQ------- 1052
            ||   .|.:|::.|:.:       :..:..|.::|     .||.:|.::.:.|..||.       
 Worm  1176 DDLERRIRELEDELSQIGRGNDKTENDITELKRKH-----AAEIDKLKSDISALHDKHLSDLDDE 1235

  Fly  1053 -----AVAERLEAVSRDLKTEQESLDRS-----------RREANARDEKQRAAIAQ---LKDEMV 1098
                 ...|.|::|..||:.:..:|::.           .||....|||..:...|   :|||..
 Worm  1236 KEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRENELEREKRDYDEKINSLYGQNQKIKDEWD 1300

  Fly  1099 QMRTKEEEHKIKLEECIRKQELQLSSLREERESLCRVSEELKMEIRLKEDRMESTNNELQDALRK 1163
            ..|...::.       |:|.:....::|.|.::|...:..||.:::...||::.....:.|...|
 Worm  1301 DFRNDADKE-------IQKWKTDAYTVRSEAKALETTNTALKAQLQAANDRIDHLTKTVNDHTSK 1358

  Fly  1164 SKEGEGFIDSLRKELTDCRRQLADSNIERDKYSGSNKELRDHVKRVESAKREQARAIEEALQKIS 1228
            .::....:..|..||.|.:..|....::.:......:.|.|....::|...:....::.||::..
 Worm  1359 VRDLTSQVRHLEDELADTKGNLVQKEMDLESTQNRLRSLEDQHSTLQSDANKWRGELDAALREND 1423

  Fly  1229 NLEDTKNSLENERTRLSTILKETENHFTKTTQDLNATKAQLQKAQVEFAQKDEGGKELQCKLVAE 1293
            .|:....::|.:.|||...||..|:...:....|:..|.:.::.|..|.:|.:....|. :|.::
 Worm  1424 ILKSNNTNMETDLTRLKNRLKSAEDALKELKNSLSHAKTEKERLQNAFREKTKQADHLN-QLASQ 1487

  Fly  1294 VELK-ERAQQELCQIKKQL--SDLEANLCATRQELGRARCQNNQEEHRFHAREQELAQRLEEGRG 1355
            .:.| .:.:.||.....:|  ||.|.|  |.|.||                  |:|:|.|:.|..
 Worm  1488 FDTKLTKLRNELQDTNDKLITSDTERN--ALRNEL------------------QKLSQELKFGNE 1532

  Fly  1356 REKR--------LEDQKHNLEVCLADATQQIQELKAR---LGGAEGRIRALDEQLSCVELH--KR 1407
            :.:|        ::|..|:..|........:|||:||   :.....|:.:.:::|:.::..  |.
 Worm  1533 QIQRKSDEYQTTIDDLAHSHRVSEDSRLNALQELEARKYEINDLTSRLDSTEQRLATLQQDYIKA 1597

  Fly  1408 DTEQKLSSVVHTLRRI-------------------------AGIQVDGSVNLSHRL--------- 1438
            |:|:.:.|  ..|||.                         .|..|.|....:.|.         
 Worm  1598 DSERDILS--DALRRFQSSANRVINFHTFVDGGAGYVDGVPGGTSVIGGGPSAQRSGAYDPSSGG 1660

  Fly  1439 --------------------------------------LSPSRRFSPSR----SCG-----DYDN 1456
                                                  ..||..||..|    |.|     :.|.
 Worm  1661 VIGSGISGGPGGSDFGREIEIGRGDSDQSDVAYPRSVPFPPSADFSSGRPGAASAGGRVINNLDG 1725

  Fly  1457 RSTSQCPDGPIDVDPDLVRKGVRNLMHQVAQLEREKDDYKSQLGAAKKQLQDAADQQLRCDAKLG 1521
            .:|... :|..|:..  :...:::|::::.:||.|:::.:..|...||:..:......:.:.:..
 Worm  1726 TTTVNM-NGGFDIAN--LEGTLQSLLNKIEKLEMERNELRDTLARMKKKTTETHTTINQKETRYR 1787

  Fly  1522 KLQAMLRNLQEEKSNLETDRKMKISAIQALEEKLKHRNDECQMLRERLAQTEMQLAATSEENGQN 1586
            .::..|::.:||:..||:..:...:.:::.||.||.|::|.:.::.::...|:|......:....
 Worm  1788 NIEDNLQDAEEERRALESRLQSAKTLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRHL 1852

  Fly  1587 EERLEKSRQQCSKLDNEKRQLQEELAKVEGRASKLELQRVAMEGDLTRLQMALQEKDCSIRQMAE 1651
            .|:|:..|........:.|.|:::..:.:....:||.:....:.|..:.|:.:...:...:.:.|
 Worm  1853 NEQLKNLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIASFESERQILTE 1917

  Fly  1652 RLENQNRALTQLEDRCTALKSTVDQLKERLQKSAVSETQLRGEIKTLQKELSEQGHCSQANEDKL 1716
            :::..:.||...:.:...:|...|:|:..|.|:...|.:||   ||:..: |:..|..|..:|:|
 Worm  1918 KIKELDGALRLSDSKVQDMKDDTDKLRRDLTKAESVENELR---KTIDIQ-SKTSHEYQLLKDQL 1978

  Fly  1717 KLVQKSLQTAENEKRILTERLDSAQTNLNELRRSQQAQLDGNQR---LQEQVTDLEVQRSALESQ 1778
            ...|..|..|.|.|:.|...|.:.:   :|:|..:|...|.|.|   ||.|:.|...:::.:|.:
 Worm  1979 LNTQNELNGANNRKQQLENELLNVR---SEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDR 2040

  Fly  1779 -LRIAKWNQESGGDKDLTNGNGGGNGEEELSRQLKSSQREKSELRSKLQTLQDKVKQLECDRK-- 1840
             |.:.|            ..|.....|.:|.:||::::.||.....:|:.|:.::.|||.:|:  
 Worm  2041 FLSVEK------------VVNTMRTTETDLRQQLETAKNEKRVATKELEDLKRRLAQLENERRNS 2093

  Fly  1841 SKFSGG-------------------NAYDRAEKSNSFYGGAAESGEFDSNRYDVGGGNAGGGSFN 1886
            |:.|.|                   ...|.|.:..:....|.|.                  |.|
 Worm  2094 SQLSDGWKKEKITLLKKIELLENEKRRTDAAIRETALQREAIEK------------------SLN 2140

  Fly  1887 CGLDHSVIEQETRDLRLKVRRLETLLAEKESELARCKARMNDSAKCHDGLDGDRYRSAQMHAEKL 1951
                  .:|:|.::|.....:|:..:|:.|.|.......:.:..:........|.|..:...||:
 Worm  2141 ------AMERENKELYKNCAQLQQQIAQLEMENGNRILELTNKQREEQERQLIRMRQEKGQIEKV 2199

  Fly  1952 LDAREQSHRQQVLRLENQISMLREQLAQEAKRRQQYILRS-----SKANREMQHLRSTLGDS--- 2008
            ::.||::||.::.:||:||::||:||..|.:||::|:.||     .:....:..:|::.||:   
 Worm  2200 IENRERTHRNRIKQLEDQIAILRDQLDGERRRRREYVDRSMVNDIGRLGSNVLGIRNSYGDNSID 2264

  Fly  2009 ------LRNVSQHPVD-------------------PHLLESESRRLDSAVSMSLPPSSCRD---- 2044
                  .|:|..:|..                   ||:.:..| .:|:..|...|.|:..|    
 Worm  2265 AIINGGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVTDFRS-AVDAGSSYRRPISTIEDSGSV 2328

  Fly  2045 -----YDRD 2048
                 .|||
 Worm  2329 YGGSIRDRD 2337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694 55/255 (22%)
Smc 555..1384 CDD:224117 195/996 (20%)
SMC_prok_B 991..>1779 CDD:274008 184/924 (20%)
lfi-1NP_001371014.1 Rootletin 200..438 CDD:405685 55/255 (22%)
COG4372 492..>715 CDD:226809 45/248 (18%)
Smc 660..1505 CDD:224117 173/899 (19%)
SMC_prok_B 1244..2142 CDD:274008 191/973 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167828
Domainoid 1 1.000 59 1.000 Domainoid score I7137
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I2211
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46615
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001653
OrthoInspector 1 1.000 - - oto18347
orthoMCL 1 0.900 - - OOG6_106109
Panther 1 1.100 - - O PTHR23159
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5360
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.020

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