DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and WHAMM

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:NP_001073904.1 Gene:WHAMM / 123720 HGNCID:30493 Length:809 Species:Homo sapiens


Alignment Length:448 Identity:101/448 - (22%)
Similarity:169/448 - (37%) Gaps:94/448 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   818 AMCRKKEALNEELMRTR-----QRLEQTTETNSRLNRNLEEMVKDVEEKQVVIDLHEKDTHRLNE 877
            |.|.......|..:|.|     .||.|..:.:.:.|..:..|....||.:...:|....|.....
Human   177 ADCESPREFRERALRARWVEADARLRQVIQGHGKANTMVALMNVYQEEDEAYQELVTVATMFFQY 241

  Fly   878 LLAALRSEKESLESVLFDTNTSLEATEERRSQLERDLQEALVREESLKNHVARLQKELEQCQRKA 942
            ||...|:.:|.......|...||:         |.||.         ...|..|:||.|:..|:|
Human   242 LLQPFRAMREVATLCKLDILKSLD---------EDDLG---------PRRVVALEKEAEEWTRRA 288

  Fly   943 QETKTQLLNAARAAESDFNQKIANLQACAEEAAKRHGE----------EILQLRNALEKRMQQAL 997
            :|....:.:.......:..:.:|.:|...|:.|||.|:          |.|||..|.|       
Human   289 EEAVVSIQDITVNYFKETVKALAGMQKEMEQDAKRFGQAAWATAIPRLEKLQLMLARE------- 346

  Fly   998 QALQTAKDDEIEKLQERLATLQAHLESLVQQHEEALIRAESEKQ--QALLIAHRDKQAVAERLEA 1060
             .||..:..|: .|..:.|.:|..:|.|.:|.:...:..|.|.|  :..|..:..|..:.:..|.
Human   347 -TLQLMRAKEL-CLNHKRAEIQGKMEDLPEQEKNTNVVDELEIQFYEIQLELYEVKFEILKNEEI 409

  Fly  1061 VSRDLKTEQESLDRSRREANARDEKQRAAIAQLKDEMVQMRTKEEEHKIKLEECI----RKQELQ 1121
            :   |.|:.:||.|              .|.:.:||:|.....|...::|:.:|:    ..:.|:
Human   410 L---LTTQLDSLKR--------------LIKEKQDEVVYYDPCENPEELKVIDCVVGLQDDKNLE 457

  Fly  1122 LSSLREERESLCRVSEELKMEIRLKEDRMESTNNELQDALRKSKEGEGFIDSLRKELTDCRRQLA 1186
            :..||.:    |:..|..:..|..|...:.|..::       .||...|           |.|.|
Human   458 VKELRRQ----CQQLESKRGRICAKRASLRSRKDQ-------CKENHRF-----------RLQQA 500

  Fly  1187 DSNIERDKYSGSNKELRDHVKRVESAKRE---QARAIEEALQKISNLEDTK--NSLEN 1239
            :.:|...:...|.:..||.:|..|..|:|   |.|  ::.||::.:.:|.:  .|:.|
Human   501 EESIRYSRQHHSIQMKRDKIKEEEQKKKEWINQER--QKTLQRLRSFKDKRLAQSVRN 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694
Smc 555..1384 CDD:224117 101/448 (23%)
SMC_prok_B 991..>1779 CDD:274008 56/260 (22%)
WHAMMNP_001073904.1 Mediates association with membranes. /evidence=ECO:0000269|PubMed:18614018 1..260 18/82 (22%)
WHAMM-JMY_N 5..53 CDD:292542
JMY 78..442 CDD:292496 70/308 (23%)
Mediates interaction with microtubules. /evidence=ECO:0000269|PubMed:23027905 261..630 82/364 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 506..529 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 546..571 3/11 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 586..612
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 627..707
Mediates actin nucleation. /evidence=ECO:0000269|PubMed:18614018 631..809
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 754..809
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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