DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and crocc2

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:XP_009300702.1 Gene:crocc2 / 101885282 ZFINID:ZDB-GENE-131121-625 Length:1959 Species:Danio rerio


Alignment Length:2008 Identity:503/2008 - (25%)
Similarity:910/2008 - (45%) Gaps:256/2008 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LLRQNQELRQRLA---------DESHSYRRRLDTYKQAQHNQANLVSRLQSKIQQYRQRCSDLEE 146
            ||:|:.:..|:..         :|..|||.:|..|:::||.||.||.:||:|:.||::||.:||:
Zfish   104 LLQQSGDSDQQSVYGADQGWPREEGRSYRLKLQAYQESQHRQAQLVQKLQAKLLQYKKRCGNLEQ 168

  Fly   147 RMHETIKPTAGVGPKLTTGPTNQVLCSTSLTLGQSSLPCSSSLDSPPPSCSR---DYVDDVLVTG 208
                                  |||..||.: .:..|...|.|||......|   ::..||    
Zfish   169 ----------------------QVLEKTSES-EKLRLSLQSHLDSSAHRLQRFEQEHSLDV---- 206

  Fly   209 GGAGAAELCRKLEEEHQRCEQIVAQNSALRQQLEESNRTNEALTNDLQKLTNDWASLRDELLIKE 273
                 ......|::|.:||..:...|:.||:|||::|.||:|||..||| ..|.|..||..|.:|
Zfish   207 -----QNKLALLDDEQKRCSGLSQVNALLREQLEQANETNQALTESLQK-ARDEAEQRDTRLRRE 265

  Fly   274 DEFKEEEQAFKDYYNSEHNRLLKMWREVVAVKRSFKEMQ-------TAMKAEVAKMGQEINCVGK 331
            .|......      :.|..|:..:||:|..::.||.:::       :.::||.|.....:.....
Zfish   266 LEMNTSRN------SREQVRVRSLWRQVAFLRSSFTQLRAFADRSLSDLQAEYAATSHRLRVACL 324

  Fly   332 DINGSNATVAFAVQQAKRAADDELKQSQRSNDELQNQLATLKVQYESARHEIMERDQRLLELMNQ 396
            ::..|.:...........|.:.:|:...|...:||.:....||:..|          |:|||...
Zfish   325 NLEASKSQSCTTASNGVSALETQLRDKLREAMQLQARFDAEKVELSS----------RILELGEM 379

  Fly   397 LKKLEDRCAQAESQ-AALAS--------RYSDEIERLNNSMREIAQAVVQDAENADREADAEVTG 452
            :|:|..:.::.||. .||.|        |..|..||  :::|....::.|...|.::....||:.
Zfish   380 VKQLRAQNSEKESNLIALRSNLNKMETNRSEDRAER--DALRSEISSLHQILHNINQVVSGEVSR 442

  Fly   453 GV-MQHMHLTRDAASVVGGAGGAGSTAGGGGKSPRRNSTRASQAFAEGTISAVQAALHKYQLALH 516
            .. .:|.|....|.|:                         |.:..||.:.|||.||.:.|....
Zfish   443 DCSSKHEHSFISAGSI-------------------------SSSQREGPLIAVQKALLQRQTQTE 482

  Fly   517 DMQVKFQNTSETLRTTKAQLETSEGTKQLLTTKMQQLTEKLDSSNSKLSELLQERESLQRGLDDI 581
            |:|...:.:.|.:.|.:.||...|...:.|..::|:|.::.........:..::.|..:..|..|
Zfish   483 DLQACLEASQEQVVTLQKQLHVEEDKTRTLEKRLQELQQENQLLERAEEDSTRDAERYRNSLGII 547

  Fly   582 RVQKQQSEMGRADINSAFENLSSDYEKMQLNCGKLQKRIDSMEEDKKAVELEIQRILKDKNITEL 646
            ..:|.:.|...:.:....|...::.|.::.:...:|::.|.:.:.::.:|.::.|...:......
Zfish   548 TSEKGELERQLSAMQQQLECTQTEQEGLRSSSLDVQRQRDLLRQQREDLERQLARERSESERGRH 612

  Fly   647 NLRSEEDRSSRLREETISLREELNRVSLNRDLLEQQRIESDNLINLLEKQKSDLEYDLDKLLLEK 711
            .|...|.|.|.:|:|.::|:|.|:::||.:::||.:.......::..|.|.::.|..|.||..|.
Zfish   613 TLEQLEARYSDVRKELVTLKEALSQLSLQKEVLEDENRSLAQALSKAEAQNAEQELALTKLRSED 677

  Fly   712 CDLQEKHEKLSNNSCSTSDELKSVQNCLQEAQEERKKLRIQSVDQCNEIGELKKELAILDK---- 772
            ..||:...|:.           ::...|.:.:.|..:|.:|:..:..|:||.::| |.|::    
Zfish   678 AGLQDSLAKMG-----------ALSEGLAKDKVELNRLLLQAEAEKAELGERRRE-AELERMAAR 730

  Fly   773 ---ARLELETDNLSAGEKL-----KCLQLEKEKILQDLACVTRDRGDIHNQLTAMCRKKEALNEE 829
               |||:.|..:|:|.::.     ..||..|..:..:...:.|::..:..|.....::|:|:.|:
Zfish   731 EELARLQQELLDLTAEKRALEASHNYLQEAKMTLDAEYNLLQREKSSVQEQHAQASKQKQAVQEQ 795

  Fly   830 LMRTRQRLEQTTETNSRLNRNLEEMVKDVEEKQVVIDLHEKDTHRLNELLAALRSEKESLESVLF 894
            |....:.:|.:.....:..:..:|:.:|.....|.:...::.:..|.:.|||||:|:|||||.|.
Zfish   796 LNACHREMELSAALLQKTYKERDELARDKANLTVQLTSEQRKSKALAQDLAALRAERESLESSLL 860

  Fly   895 DTN---TSLEATEERRSQLERDLQEALVREESLKNHVARLQKELEQCQRKAQETKTQL-LNAARA 955
            |..   :||||..:|.......||:|   .:||...::.:|.||||...:|.:.|..| |..|:|
Zfish   861 DRQELASSLEAIRDRLDGENASLQQA---NKSLTRELSSVQSELEQQMSRALQEKQALELKLAQA 922

  Fly   956 AESDFNQKIANLQACAEE--AAKRHGE----EILQLRNALEKRMQQALQALQTAKDDEIEKLQER 1014
            ..:.....|...|:..|:  ..::|.|    |:...|...|.:::...:.|:......:::|||.
Zfish   923 ERNAQEMLITTQQSHQEQLHTERKHKERMHAELCAQREQAESQLRAECKELRIQSRRVLQQLQED 987

  Fly  1015 LATLQAHLESLVQQHEEALIRAESEKQQALLIAHRDKQAVAERLEAVSRDLKTEQESLDRSRREA 1079
            ||.||.|.       .|:|::|||.|||.|.....:|..:.||:..:.||::......||.||:.
Zfish   988 LAKLQQHC-------TESLLQAESHKQQVLSEKEAEKATLIERIITLERDMEAAALEKDRMRRDF 1045

  Fly  1080 NARDEKQRAAIAQLKDEMVQMRTKEEEHKIKLEECIRKQELQLSSLREERESLCRVSEELKMEIR 1144
            .::.|:.:...:.|:.|:..:|::.||.....|...|....|:..|..:.:...:.:|.||.|:.
Zfish  1046 LSKQEQDKDTASGLQAELHNLRSRFEESLSSREVSERSLNEQIRELSTQWQGAHQEAERLKRELS 1110

  Fly  1145 LKEDRMESTNNELQDALRKSKEGEGFIDSLRKELTDCRRQLADSNIERDKYSGSNKELRDHVKRV 1209
            ..|:..::...||.:|.|:.:|.....|..|:|..|.:|.|.|:..|::..:.||.|||..:|||
Zfish  1111 EVEESRDTGRKELIEAHRELRECLQDKDEQRREGLDLKRALGDAVREKEAINTSNHELRTALKRV 1175

  Fly  1210 ESAKREQARAIEEALQKISNLEDTKNSLENERTRLSTILKETENHFTKTTQDLNATKAQLQKAQV 1274
            |.......|..||..|:::.||:.|:||:.|..:|.|.::|.|....:..::|...:.|::..:.
Zfish  1176 EFENNSLKRVGEEKDQRLTVLEECKSSLQQEVLKLRTNMRELEKSRLQARRELQELRRQVKTLEG 1240

  Fly  1275 EFAQKDEGGKELQCKLVAEVELKERAQQELCQIKKQLSDLEANL-CATRQELGRARCQNNQEEHR 1338
            :..|:.:...::|.:|..|.:.:|..::|...:::::.:.||.. .|.::..|..|.....||  
Zfish  1241 QCTQQGQELSDMQARLTQEEQREEEMRKETFTLRQKVLESEAGKEAALKEAAGLQRHIAELEE-- 1303

  Fly  1339 FHAREQELAQRLEEGRGREKRLEDQK-------HNLEVCLADATQQIQELKARLGGAEGRIRALD 1396
            .|.:|:||.|:      |:..|:|.:       ..||..|.::..|::|....:..||.|.:.|:
Zfish  1304 AHQQEKELQQQ------RDASLQDSQLKQREEVARLEGALQESQAQLREFGLSVNLAEARAQGLE 1362

  Fly  1397 EQLSCVELHKRDTEQKLSSVVHTLRRIAGIQ------VDGSVNLSHRLLSPSRRFSPSRS----- 1450
            |||:..:..:||.|.:|:.:..||||..|.:      ..|.   ..|..||.|..||.:.     
Zfish  1363 EQLAQNDAKRRDLEHRLNVLNSTLRRTLGSRRGRQSPTPGE---RGRSPSPWRTRSPVKGEIISD 1424

  Fly  1451 ---------CGDYDNRSTSQCPDGPIDVDPDLVRKGVRNLMHQVAQ----LEREKDDYKSQLGAA 1502
                     |    :.|.|:..||.:|:|      .|:.|:|...|    .::|:|:..:|:.:.
Zfish  1425 ETGVGGLPVC----SLSPSRREDGELDLD------AVQMLLHSFQQELRDTQKERDESHAQVHSL 1479

  Fly  1503 KKQLQDAADQQLRCDAKLGKLQAMLRNLQEEKSNLETDRKMKISAIQALEEKLKHRNDECQMLRE 1567
            .||:::....|.|.:..:..|:..:|.|:|.|..|....:...:::...:|.::....:.:::.|
Zfish  1480 SKQVENLQANQERSNTCIQMLRQSIRELEEGKRELAKHLEGMQASLVLRDEAVQRGETQNRIMNE 1544

  Fly  1568 RLAQTEMQLAATSEENGQNEERLEKSRQQCSKLDNEKRQLQEELAKVEGRASKLELQRVAMEGDL 1632
            .||:.:........|....:::||:|:.....|:.|:|:|:|....|:.||::|:|:|..:||:|
Zfish  1545 ELAKMKKSQLIIETEAKALQDKLERSQASEESLEAERRRLKETCEAVDARAARLDLKRRGLEGEL 1609

  Fly  1633 TRLQMALQEKDCSIRQMAERLENQNRALTQLEDRCTALKSTVDQLKERLQKSAVSETQLRGEIKT 1697
            .|.|:...|.:.....:.|||.|..|.|...|:|...||...::|...|....:.|:||:.:::.
Zfish  1610 QRAQLRTTEMEAEASSLQERLNNLRRELGDSEERAALLKVECERLATALAHKELQESQLKDKLQA 1674

  Fly  1698 LQKELSEQGHCSQANEDKLKLVQKSLQTAENEKRILTERLDSAQTNLNELRRSQQAQLDGNQRLQ 1762
            |...|::....:....|:...:|::|..:|:.::::.|:||..:..|...|:......:..|.||
Zfish  1675 LTASLTDSNASAGTARDQAVQLQRALSASEHNQKMVQEKLDKTREALTHSRKQNHDLSERLQSLQ 1739

  Fly  1763 EQVTDLEVQRSALESQLRIAKWNQESGGDKDLTNGNGGGNGEEELSRQLKSSQREKSELRSKLQT 1827
            ....:.|::.|.|:.|.|:.   ||:...:.        ..|:|........|.:.|:|:.::.|
Zfish  1740 RSQEECELKVSELDKQTRVL---QETVRQRQ--------QAEQEAQESCLLLQEQNSQLQEQVAT 1793

  Fly  1828 LQDKVKQLECDRKSKFSGGNAYD------RAEKSNSFYGGAAESGEFDSNRYDVGGGNAGGGSFN 1886
            ||....:|:         |...|      |..|..|......|..|.:..:.:|           
Zfish  1794 LQTTAHRLQ---------GEKSDLERTLLRLGKDRSSLKRTLEKVEHNRQKKEV----------- 1838

  Fly  1887 CGLDHSVIEQETRDLRLKVRRLETLLAEKESELARCKARMNDSAKCHD--------------GLD 1937
             .:.|.  |:|......|:|.||..|.|.::|:...:::::.....|.              .|:
Zfish  1839 -EILHG--EREREQQEQKIRNLEEELNETQAEIHTLQSQISILEHTHSQRLLEVSARHKQELDLE 1900

  Fly  1938 GDRYRSAQMHAEKLLDAREQSHRQQVLRLENQISMLREQLAQEAKRRQQYILRSSKAN 1995
            .:|.|.:|...|:.|:|||::|||:|..||.|:|.|:|||.||.||||.|:.:..:.|
Zfish  1901 SERMRDSQQQTERALEAREKAHRQRVHCLEEQVSTLKEQLEQEMKRRQAYMKQMLRVN 1958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694 67/231 (29%)
Smc 555..1384 CDD:224117 212/858 (25%)
SMC_prok_B 991..>1779 CDD:274008 210/819 (26%)
crocc2XP_009300702.1 Rootletin 132..318 CDD:291694 67/224 (30%)
SbcC 155..>761 CDD:223496 160/693 (23%)
Myosin_tail_1 488..1630 CDD:279860 293/1184 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596760
Domainoid 1 1.000 468 1.000 Domainoid score I436
eggNOG 1 0.900 - - E1_2CMIF
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16811
Inparanoid 1 1.050 549 1.000 Inparanoid score I1113
OMA 1 1.010 - - QHG46615
OrthoDB 1 1.010 - - D48753at33208
OrthoFinder 1 1.000 - - FOG0001653
OrthoInspector 1 1.000 - - oto40890
orthoMCL 1 0.900 - - OOG6_106109
Panther 1 1.100 - - LDO PTHR23159
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3005
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.770

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