DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Root and cep128

DIOPT Version :9

Sequence 1:NP_001287497.1 Gene:Root / 42860 FlyBaseID:FBgn0039152 Length:2048 Species:Drosophila melanogaster
Sequence 2:NP_001083005.1 Gene:cep128 / 100037385 ZFINID:ZDB-GENE-070410-34 Length:969 Species:Danio rerio


Alignment Length:1220 Identity:252/1220 - (20%)
Similarity:456/1220 - (37%) Gaps:364/1220 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 RLDTYKQAQHNQANLVSRLQSKIQQYRQRCSD-------LEERMHETIKPTAGVG-PKLTTG--P 166
            ::||......:.:..::::...::||::...|       |.|.:.|:::...|.. .|.|:|  .
Zfish    40 KIDTLANTLQDTSRNLNKVDRMLEQYKEHADDQVEAMATLRESLEESVQHLQGQRLRKSTSGWRT 104

  Fly   167 TNQVLCSTSLTLGQSSLPCSSSLDSPPPSCSRDYVDDVLVTGGGAGAAELCRKLEEEHQRCEQIV 231
            :|.:|.::.|..|.:    :....|||.|..|:|        |.|...        ..:|...:|
Zfish   105 SNSILQTSDLEDGSA----TERWCSPPTSTLRNY--------GSAATG--------NRRRSGSVV 149

  Fly   232 AQNSALRQQLEESNRTNEALTNDLQKLTNDWASLRDELLIKEDEFKEEEQAFKDYYNSEHNRLLK 296
            .......|..:|.:..:::| .||:.         |:|.:.:|..:|               :.|
Zfish   150 VHFRDATQAEDEIHSLHQSL-RDLRS---------DQLRLGDDIDRE---------------ISK 189

  Fly   297 MWREVVAVKRSFKEMQTAMKAEVAKMGQEINCVGKDINGSNATVAFAVQQAKRAADDELKQSQRS 361
            ..|..:..|:..:::...::|                :.|...|:..|::..:..:||:...:  
Zfish   190 RNRTDIETKKILEDLAGHVRA----------------SKSEELVSLRVEKRLQEIEDEMHSRE-- 236

  Fly   362 NDELQNQLATLKVQYESARHEIMERDQRLLELMNQLKKLEDRCAQAESQAALASRYSDEIERLNN 426
                         |..|.||.|.:.|.     |:||:|::|..:|..           .||:.:.
Zfish   237 -------------QVASERHHIEKPDG-----MSQLQKMDDMRSQLL-----------RIEKDHV 272

  Fly   427 SMREIAQAVVQDAENADREADAEVTG---GVMQHMHLTRDAASVVGGAGGAGSTAGGGGKS-PRR 487
            .::.....::....:|.|:....|||   .:.:.::::.:...:              .|| .:|
Zfish   273 QLQREMSLLLSQQRSARRQQQGGVTGVDSELERGLYVSSEVEEL--------------KKSIEQR 323

  Fly   488 NSTRASQAFAEGTISAVQAALHKYQL----ALHDMQVKFQNTSETLRTTKAQLETSEGTKQLLTT 548
            ...:|..||   .:..:.|.|.::||    .|.::|...:|.|......||||..||..::.|.:
Zfish   324 EKEKAQLAF---QVEVLSADLEQHQLQKLSQLKEVQSLVKNNSLECSHLKAQLIESETRREELRS 385

  Fly   549 KMQQLTEKLDSSNSKLSELLQERESLQR-GLDDIR-------VQKQQSEMGRADINSAFENLSSD 605
            |.|:...:..:...||...:||.::..| |.|..:       :..||:|..|..:..|.      
Zfish   386 KAQEAIRQWKTKCKKLGREVQELKNESRNGTDKNKWNQERAGILSQQTERTRRQLADAL------ 444

  Fly   606 YEKMQLNCGKLQKRIDSMEEDKKAVELEIQRILKDKNITELNLRSEEDRSSRLREET-------I 663
                    |.|.:|    |||....|:::.........:||.|:..::...||.|||       :
Zfish   445 --------GSLAQR----EEDVHRCEVDLAEARSRLVTSELKLQEAQENMRRLEEETQKQISLQL 497

  Fly   664 SLREELNRVSLNRDLLEQQRIESDNLINLLEKQKSDLEYDLDKLLLEKCDLQEKHEKLSNNSCST 728
            .||||..|:....|||||:|                 |.|...:|    |||..|:.|   :.:.
Zfish   498 HLREENIRLQERVDLLEQRR-----------------EVDQRSML----DLQSLHKNL---TAAK 538

  Fly   729 SDELKSVQNCLQEAQEERKKLRIQ---SVDQCNEIGELKKELAILDKARLELETDNLSAGEKLKC 790
            :|    :...|.|.:..:|.|.||   :.::.:..|.             :||.:.|...::|..
Zfish   539 AD----LVTRLAEVESSKKDLEIQLAAAQEESSSFGR-------------QLELERLVHQKELSH 586

  Fly   791 LQLEKEKILQDLACVTRDRGDIHNQLTAMCRKKEALNEELMRTRQRLEQTTETNSRLNRNLEEMV 855
            ||..|.:         :|| |:||:|.:..|::|                         .||.:|
Zfish   587 LQEGKAE---------QDR-DVHNKLISYQRERE-------------------------ELEALV 616

  Fly   856 KDVEEKQVVIDLHEKDTHRLNELLAALRSEKESLESVLFDTNTSLEATEERRSQLERDLQEALVR 920
            ||                        |:||      .|.|            .:|.|.||   ::
Zfish   617 KD------------------------LKSE------ALAD------------GELRRTLQ---LK 636

  Fly   921 EESLKNHVARLQKELEQCQRKAQETKTQLLNAARAAESDFNQKIANLQACAEEAAKRHGEEILQL 985
            .:.:|....:|.:||.    ..:|:.||||........:.|.|:   :...:|..:||..|    
Zfish   637 LDKMKTECDKLTEELS----TREESLTQLLRKYHILRKELNVKV---KLAKKEEERRHTAE---- 690

  Fly   986 RNALEKRMQQALQALQTAKDDEIEKLQERLATLQAHLESLVQ----QHEEALIRAESEKQQALLI 1046
                                ..:.:|:||||:||...||::.    |.:.|.......|.:|:.:
Zfish   691 --------------------HSMAELRERLASLQTEQESILHATGAQIDSACQFLSDAKLEAITL 735

  Fly  1047 -------AHRDKQAVAERLEAVSRDLKTEQESLDRSRREANARDEKQRAAIAQLKDEMVQMRTKE 1104
                   :||   .:||        :||:.:.|....||..||:::.|..:...|:   ||:|.:
Zfish   736 TPGLQKDSHR---WLAE--------VKTKLQWLCEEVREREAREKRLRRILQHHKE---QMKTLK 786

  Fly  1105 EEHKIKLE---ECIRKQELQLSSLREERESLCRVSEELKMEIRLKEDR---MESTNNELQDALRK 1163
            |...::|:   :.|..||..|:.::.|:..|.....:.:.|:|..:||   :|::.....|.|..
Zfish   787 ESKDLELQRLLDQIAMQERLLNDIQSEKRGLLEKGRKKEDELRNLQDRIIDLETSTKLALDHLES 851

  Fly  1164 SKEGEGFIDSLRKELTDCRRQLADSNIERDKYS----GSNKELRDHVKRVESAKREQARAIEEAL 1224
            ..|....:::. |:|.:.:||.....:...:|:    ...::|.:..:|::..:.|:..|...:|
Zfish   852 VPEKLSLLENF-KDLEESQRQREMVELRYARYTEIVGDLQRQLEESKRRIQEYRDEKLDATCRSL 915

  Fly  1225 Q---KISNLEDTKNSLENERTRLSTILKE----------TENHFTKTTQD 1261
            |   ..|:|....|.|.|......|..|.          |:.||..||.:
Zfish   916 QLSGLTSSLLSQSNILTNSSLSFHTSQKPVANPDLEPSLTQEHFNGTTSE 965

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RootNP_001287497.1 Rootletin 110..332 CDD:291694 39/229 (17%)
Smc 555..1384 CDD:224117 166/759 (22%)
SMC_prok_B 991..>1779 CDD:274008 68/305 (22%)
cep128NP_001083005.1 SMC_prok_B <188..551 CDD:274008 100/472 (21%)
SMC_prok_B <422..>710 CDD:274008 99/457 (22%)
SMC_prok_A 633..>910 CDD:274009 70/325 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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