DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13605 and AT5G01960

DIOPT Version :9

Sequence 1:NP_651214.2 Gene:CG13605 / 42858 FlyBaseID:FBgn0039150 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_568096.1 Gene:AT5G01960 / 831906 AraportID:AT5G01960 Length:426 Species:Arabidopsis thaliana


Alignment Length:509 Identity:119/509 - (23%)
Similarity:199/509 - (39%) Gaps:125/509 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 SHSNFRYPPATTAAPAAPG--PQPAANPVDNSHILLGQQQPSMPEPVSPLRYGRVSAVSGASSAG 259
            ||.:||..|...:..:|..  ..|.:..::.|.:...:..||         :...:.||..||  
plant     7 SHDSFRGSPRRNSILSASNIIQAPISTLLEYSGLFRARPSPS---------HEAETLVSDDSS-- 60

  Fly   260 AMGRSISLREGEMRHNHSLNGGRHNASAIGLNSNPAAFDE---REANESQDLDESDGNVENGGGG 321
                             .|:.|......||.....|..|.   ||...|:.|..|...|:..||.
plant    61 -----------------GLSNGEVAIRIIGNTEQDAETDTNALREPGHSELLGSSATQVDPMGGA 108

  Fly   322 GN------PPEPAENNPEDEHLISDDMVVQILSHFV-RYLPLIFILFFKFLHDHLLGIVDLLVLQ 379
            ..      |.:||..:............:|..:.:: :.||...:|...|:..||.|....:.:.
plant   109 SEGASQAAPGDPAAGDAASRDSPYQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIA 173

  Fly   380 TVMYNVNRSVRNQVARLAQKNYAVMVRDTFLVAVVVTVRLF--------------LATSPPDPFG 430
            .||:..|..::.|.|...:::.:.::.    ::|..|..:.              |...||..  
plant   174 AVMFKSNDILKKQTALKGERHISALIG----ISVAFTAHVVGVYWWFRKDDLLYPLIMLPPKS-- 232

  Fly   431 LIVPPSRKSVFIEVTALPFHTSSEGDSPTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIAVSDLI 495
              :||...::||                                              |.|:|.:
plant   233 --IPPFWHAIFI----------------------------------------------IVVNDTL 249

  Fly   496 IKLLTMLVKLIITMLPHHL--MRLKVRARLYVLVEYISQFYRAMTPITQWL-LFLYESYSGLEVV 557
            ::..:|:.|..:.|...:.  ...:.:.:|..||||....||::.|...|. .||.:.|      
plant   250 VRQASMIFKCFLLMYYKNSRGRNYRKQGQLLTLVEYFMLLYRSLLPTPVWYRFFLNKDY------ 308

  Fly   558 SGGLFSA----MYLGAKIFELVERGKSLKKAIVTF-RKNIDSERPPTKDELDAAGALCPICHDAF 617
             |.|||:    :||..|:..:||:.:|...|:... ||.:......|.::::|||.||.||.:..
plant   309 -GSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKALSRKEVHYGSYATTEQVNAAGDLCAICQEKM 372

  Fly   618 NTPTVLECGHIFCDECVQTWFKREQTCPMCRA--KVSDDPAWQDGSTTFFHQLY 669
            :||.:|.|.|:||::||..||:||:|||:|||  |.:|..::.||||:.|.|::
plant   373 HTPILLRCKHMFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQIF 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13605NP_651214.2 RING 610..651 CDD:238093 22/42 (52%)
AT5G01960NP_568096.1 HRD1 <280..>403 CDD:227568 48/129 (37%)
RING-HC_RNFT1_like 364..403 CDD:319446 20/38 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 67 1.000 Domainoid score I3532
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 123 1.000 Inparanoid score I1960
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003057
OrthoInspector 1 1.000 - - oto3312
orthoMCL 1 0.900 - - OOG6_105150
Panther 1 1.100 - - LDO PTHR15860
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1778
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.820

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