DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13605 and Syvn1

DIOPT Version :9

Sequence 1:NP_651214.2 Gene:CG13605 / 42858 FlyBaseID:FBgn0039150 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001158181.1 Gene:Syvn1 / 74126 MGIID:1921376 Length:612 Species:Mus musculus


Alignment Length:328 Identity:69/328 - (21%)
Similarity:120/328 - (36%) Gaps:123/328 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 HLISDDMV--------VQILSHFVRYLPLIFILFFKFLHDHLLGIVDLLVLQTVMYNVNRSVRNQ 392
            |.:::|.|        :..|.| .|.:.|:|          ||||:|.|.:....:::       
Mouse   117 HWLAEDRVDFMERSPNISWLFH-CRIVSLMF----------LLGILDFLFVSHAYHSI------- 163

  Fly   393 VARLAQKNYAVMVRDTFLVAVVVTVRLFLATSPPDPFGLIVPPSRKSVFIEVTALPFHTSSEGDS 457
                ..:..:|.:...|..|:::|:.|                   ::||:.........||  :
Mouse   164 ----LTRGASVQLVFGFEYAILMTMVL-------------------TIFIKYVLHSVDLQSE--N 203

  Fly   458 PTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIAVSDLIIKLLTMLVKLIITMLPHHLMRLKVRAR 522
            |..:.                           ||..|..:|.|..:|:::.|.   .|.:.::..
Mouse   204 PWDNK---------------------------AVYMLYTELFTGFIKVLLYMA---FMTIMIKVH 238

  Fly   523 LYVLVEYISQFYRAMTPITQWLLFLYESYSGLEVVSGGLFSAMYLGAKIFELVERGKSLKKAIVT 587
            .:.|.        |:.|                         |||..:.|:     |::..||::
Mouse   239 TFPLF--------AIRP-------------------------MYLAMRQFK-----KAVTDAIMS 265

  Fly   588 FR--KNIDSERP-PTKDELDAAGALCPICHDAFNTPTV-LECGHIFCDECVQTWFKREQTCPMCR 648
            .|  :|:::..| .|.:||.|...:|.||.:...|... |.|.|||...|:::||:|:||||.||
Mouse   266 RRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330

  Fly   649 AKV 651
            ..|
Mouse   331 MDV 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13605NP_651214.2 RING 610..651 CDD:238093 19/41 (46%)
Syvn1NP_001158181.1 Involved in FAM8A1 interaction. /evidence=ECO:0000250|UniProtKB:Q86TM6 1..251 37/239 (15%)
HRD1 10..>333 CDD:227568 68/326 (21%)
Interaction with SEL1L. /evidence=ECO:0000269|PubMed:27064360 21..42
Interaction with p53/TP53. /evidence=ECO:0000269|PubMed:17170702 236..270 11/71 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 337..375
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 393..449
HAF-H domain, necessary to form higher-order Hrd1 complexes. /evidence=ECO:0000250|UniProtKB:Q86TM6 474..529
PRK06975 <476..>582 CDD:235899
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..612
PHA03291 <530..>601 CDD:223033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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