DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13605 and syvn1

DIOPT Version :9

Sequence 1:NP_651214.2 Gene:CG13605 / 42858 FlyBaseID:FBgn0039150 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_997900.2 Gene:syvn1 / 335226 ZFINID:ZDB-GENE-030131-7166 Length:618 Species:Danio rerio


Alignment Length:329 Identity:72/329 - (21%)
Similarity:124/329 - (37%) Gaps:125/329 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 HLISDDMV--------VQILSHFVRYLPLIFILFFKFLHDHLLGIVDLLVLQTVMYNVNRSVRNQ 392
            |.:::|.|        :..:.|| |.|.|:.          |||::|.|.       ||.:..:.
Zfish   117 HWLAEDRVDFMERSPNISWVFHF-RVLSLMV----------LLGVMDFLF-------VNHACHSI 163

  Fly   393 VARLAQKNYAVMVRDTFLVAVVVTVRLFLATSPPDPFGLIVPPSRKSVFIEVTALPFHT-SSEGD 456
            :.|.|    :|.:...|..|:::|:.|                   :.||:.|   .|| ..:.:
Zfish   164 ITRGA----SVQLVFGFEYAILMTMVL-------------------TTFIKYT---LHTIDLQSE 202

  Fly   457 SPTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIAVSDLIIKLLTMLVKLIITMLPHHLMRLKVRA 521
            :|..:.                           ||..|..:|.|..:|:::.|.   .|.:.::.
Zfish   203 NPWDNK---------------------------AVYMLYTELFTGFIKVLLYMA---FMTIMIKV 237

  Fly   522 RLYVLVEYISQFYRAMTPITQWLLFLYESYSGLEVVSGGLFSAMYLGAKIFELVERGKSLKKAIV 586
            ..:.|.        |:.|                         |||..:.|:     |::..||:
Zfish   238 HTFPLF--------AIRP-------------------------MYLAMRQFK-----KAVTDAIM 264

  Fly   587 TFR--KNIDSERP-PTKDELDAAGALCPICHDAFNT-PTVLECGHIFCDECVQTWFKREQTCPMC 647
            :.|  :|:::..| .|.::|.|...:|.||.:...| ...|.|.|||...|:::||:|:||||.|
Zfish   265 SRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTC 329

  Fly   648 RAKV 651
            |..|
Zfish   330 RMDV 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13605NP_651214.2 RING 610..651 CDD:238093 19/41 (46%)
syvn1NP_997900.2 PMT_2 21..>256 CDD:304453 42/245 (17%)
Interaction with p53/TP53. /evidence=ECO:0000250 236..270 11/71 (15%)
zf-RING_2 289..330 CDD:290367 17/40 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 337..361
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..434
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 462..487
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.