DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13605 and Rnft2

DIOPT Version :9

Sequence 1:NP_651214.2 Gene:CG13605 / 42858 FlyBaseID:FBgn0039150 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_766586.2 Gene:Rnft2 / 269695 MGIID:2442859 Length:446 Species:Mus musculus


Alignment Length:556 Identity:133/556 - (23%)
Similarity:229/556 - (41%) Gaps:129/556 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 QMNRRLQQSRSMGANTGGSLEEPSSAGAAGGPGASPGTAAGVRQMGFWRVNLNDVFSLSTASSTE 190
            |:.|::|:..|  :||.....|..|...|..|.||              |:...||....|.:..
Mouse     8 QVLRKMQRRHS--SNTDNIPPESRSRSQALSPEAS--------------VDEGGVFESLKAETAS 56

  Fly   191 ALRSFISHSNFRYPPATTAA-----PAAPGPQPAANPVDNSHILLGQQQPSMPEPVSPLRYGRVS 250
                         |||..:.     ||:|.|         :.::||          |....|.|.
Mouse    57 -------------PPALFSGLAGGLPASPFP---------AGLVLG----------STAGGGDVF 89

  Fly   251 AVSGASSAGAMGRSISLREGEMRH----NHSLNGGRHNASAIGLNSNPAAFDEREANESQDLDES 311
            ....|:...|.|||   .||...|    :|..:.|.|...::   ......|.|..:| :.:||.
Mouse    90 IPMPATRDEAGGRS---AEGSTYHHRQAHHHFHHGAHRGGSL---LQHVGGDHRGHSE-EGVDEQ 147

  Fly   312 DGNVENGGGGGNPPEPAENNPEDEHLISDDMVVQILSHFVRYLPLIFILFFKFLHDHLLGIVDLL 376
            .|.          |.||         :|:  :..::|...:.||.|.||..|....|.|||...:
Mouse   148 PGT----------PAPA---------LSE--LKAVISWLQKGLPFILILLAKLCFQHKLGIAVCI 191

  Fly   377 VLQTVMYNVNRSVRNQVARLAQKNYAVMVRDTFLVAVVVTVRLFLATSPPDPFGLIVPPSRKSVF 441
            .:.:.....|.::|.||:          :::...|.|::.:..|||.:              :::
Mouse   192 GMASTFAYANSTLREQVS----------LKEKRSVLVILWILAFLAGN--------------TMY 232

  Fly   442 IEVTALPFHTSSEGDSPTTSSEPIKTNM--YKDTYKSLNVIPLGMLLYYIAVSDLIIKLLTMLVK 504
            :..              |.||:.:.:::  .|...::|:...   ||:.:.::|.::|.:|:.:|
Mouse   233 VLY--------------TFSSQQLYSSLIFLKPNLETLDFFD---LLWIVGIADFVLKYITIALK 280

  Fly   505 LIITMLPHHLMRLKVRARLYVLVEYISQFYRAMTPITQWLLFLYESYSGLEVVSGGLFSAMYLGA 569
            .:|..||..::.:|.:.:.|:::|.:||.:|::.||..|..::....|......||:...:|...
Mouse   281 CLIVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLC 345

  Fly   570 KIFELVERGKSLKKAIVTFRKNIDSERPPTKDELDAAGALCPICHDAFNTPTVLECGHIFCDECV 634
            |.|::..|...|:||:.....:.:.....|..:...|||:|.||...|..|.:|.|.|:||:||:
Mouse   346 KSFDICGRVGGLRKALKLLCTSQNYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECL 410

  Fly   635 QTWFKREQTCPMCRAKVSDD-PAWQDGSTTFFHQLY 669
            ..|..||:|||:||:...|. ..|:||:|:...|:|
Mouse   411 CLWLDRERTCPLCRSVAVDTLRCWKDGATSAHLQVY 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13605NP_651214.2 RING 610..651 CDD:238093 20/40 (50%)
Rnft2NP_766586.2 RING-HC_RNFT2 385..424 CDD:319656 18/38 (47%)
RING-HC finger (C3HC4-type) 386..423 CDD:319656 18/36 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847832
Domainoid 1 1.000 64 1.000 Domainoid score I10092
eggNOG 1 0.900 - - E1_KOG4638
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003057
OrthoInspector 1 1.000 - - otm42792
orthoMCL 1 0.900 - - OOG6_105150
Panther 1 1.100 - - O PTHR15860
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4029
SonicParanoid 1 1.000 - - X1778
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.730

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