DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10694 and rad23b

DIOPT Version :9

Sequence 1:NP_651212.1 Gene:CG10694 / 42855 FlyBaseID:FBgn0039147 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_001025578.1 Gene:rad23b / 594966 XenbaseID:XB-GENE-984319 Length:416 Species:Xenopus tropicalis


Alignment Length:432 Identity:110/432 - (25%)
Similarity:186/432 - (43%) Gaps:161/432 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEV-----AMPAENLQLIYSGRIMEDAMPLSE 60
            |:::::.|.|:|..::::..:.|:|||:|:    |:     |.|....:|||:|:|:.|...|.|
 Frog     1 MQITLKTLQQQTFKIDIDGEETVKALKEKI----ELEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

  Fly    61 YRIAEDKIIVLMGKK-------------------------------------------------- 75
            |:|.|...:|:|..|                                                  
 Frog    62 YKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPLPVPFSI 126

  Fly    76 -------------------KVDK-----SSPEEKVAPT------PPLAAGPNVLRTEDVVPSLAP 110
                               |.:|     .||:|.|:|:      |..::.|::.  ||...:|..
 Frog   127 PAVPAPAAPTSEPSTTTAPKEEKPEEKTDSPQETVSPSSTECSLPTDSSRPSLF--EDATSALVT 189

  Fly   111 NDQW---VSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGIPQ----EVVSE--QGLAAIPS- 165
            ...:   |:::|||||..|:|.:|||||||:|:||:|||:.|||.    :.|:|  |.|::.|: 
 Frog   190 GQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPSDREGQAVAEPPQTLSSTPTQ 254

  Fly   166 ---------------------------VQTSDQLQQLMADLNITRMREMINQNPELIHRLMNRLA 203
                                       :|...|.||         ||::|.|||.|:..|:.::.
 Frog   255 PLPAAAGAAATTTTPSTPSTGGNPLDFLQNQPQFQQ---------MRQIIQQNPSLLPALLQQIG 310

  Fly   204 ETDPATFEVFQRNQEELMNMI------SGG----------------ASRTPNEIEHLQITLTAEE 246
            ..:|:..:...::||:.:.|:      |||                |......:.::|:  |.:|
 Frog   311 RENPSLLQQISQHQEQFIQMLNDPVPESGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQV--TPQE 373

  Fly   247 TAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEED 288
            ..|:.||:||||...:.:|||.||:|:|.|||..|::|:.:|
 Frog   374 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDD 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10694NP_651212.1 rad23 1..284 CDD:273167 108/426 (25%)
UBQ 1..76 CDD:294102 26/148 (18%)
UBA1_Rad23_like 110..148 CDD:270466 21/40 (53%)
XPC-binding 172..227 CDD:286376 15/60 (25%)
UBA2_Rad23_like 245..282 CDD:270467 18/36 (50%)
rad23bNP_001025578.1 rad23 1..414 CDD:273167 109/429 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11640
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1260050at2759
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1097
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

Return to query results.
Submit another query.