DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10694 and rad23ab

DIOPT Version :9

Sequence 1:NP_651212.1 Gene:CG10694 / 42855 FlyBaseID:FBgn0039147 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_001032776.1 Gene:rad23ab / 562839 ZFINID:ZDB-GENE-051113-160 Length:404 Species:Danio rerio


Alignment Length:406 Identity:110/406 - (27%)
Similarity:178/406 - (43%) Gaps:122/406 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKLSIRMLDQRTITLEMNESQEVRALKQKL-GNLPEVAMPAENLQLIYSGRIMEDAMPLSEYRIA 64
            :.::::.|.|:|..::::|...|:|||:|: ....:...||...:|||:|:|:.|.:||.||:|.
Zfish     2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKEYKID 66

  Fly    65 EDKIIVLMGKKKVDKSSPE----------------EKVAP------------------------- 88
            |...:|:|..|....:||:                ..|||                         
Zfish    67 EKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPAPVEPAASVEPI 131

  Fly    89 -----TPPLAAGPNVLRTEDVVPSLAP-------------------------------------- 110
                 .||.|:...|..||.|..:.||                                      
Zfish   132 DPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASLTDELSLLEAAASILVTG 196

  Fly   111 --NDQWVSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGI-------PQEVV----------- 155
              .:..|:::|||||..|:|.:|||||||:|:||:|||:.||       |||||           
Zfish   197 QAYENLVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLTGIPAESEQPPQEVVRPTPVSNPTPP 261

  Fly   156 -------------SEQGLAAIPSVQTSDQLQQLMADLNITRMREMINQNPELIHRLMNRLAETDP 207
                         :|.|.|.    .:::.|:.|.......:||::|.|||.|:..|:.:|...:|
Zfish   262 APQRAQPPPAAAGAESGGAQ----ASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNP 322

  Fly   208 ATFEVFQRNQEELMNMISGGASRTPNEIEHLQITLTAEETAAVGRLEALGFERVMAVQAYLACDK 272
            ...:...::||..:.|::...:..|...:...|.:|.:|..|:.||:||||...:.:|||.||:|
Zfish   323 QLLQQITQHQERFVQMLNEPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 387

  Fly   273 DEQLAAEVLIRQSEED 288
            :|.|||..|::|:.:|
Zfish   388 NENLAANFLLQQNFDD 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10694NP_651212.1 rad23 1..284 CDD:273167 108/400 (27%)
UBQ 1..76 CDD:294102 25/75 (33%)
UBA1_Rad23_like 110..148 CDD:270466 22/77 (29%)
XPC-binding 172..227 CDD:286376 15/54 (28%)
UBA2_Rad23_like 245..282 CDD:270467 18/36 (50%)
rad23abNP_001032776.1 rad23 2..402 CDD:273167 109/403 (27%)
UBQ 2..79 CDD:294102 26/76 (34%)
PBP_N 56..>133 CDD:293698 15/76 (20%)
UBA1_HR23B 194..239 CDD:270609 22/44 (50%)
XPC-binding 287..340 CDD:286376 15/52 (29%)
UBA2_Rad23 360..398 CDD:270563 19/37 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595775
Domainoid 1 1.000 49 1.000 Domainoid score I11828
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53856
OrthoDB 1 1.010 - - D1260050at2759
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101279
Panther 1 1.100 - - O PTHR10621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1097
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.750

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