DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10694 and rad23b

DIOPT Version :9

Sequence 1:NP_651212.1 Gene:CG10694 / 42855 FlyBaseID:FBgn0039147 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_956858.2 Gene:rad23b / 393536 ZFINID:ZDB-GENE-040426-1487 Length:381 Species:Danio rerio


Alignment Length:382 Identity:106/382 - (27%)
Similarity:179/382 - (46%) Gaps:96/382 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGN-LPEVAMPAENLQLIYSGRIMEDAMPLSEYRIA 64
            |:::::.|.|:|..::::..:.|:|||:|:.| ..:...|....:|||:|:|:.|...|.||:|.
Zfish     1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALKEYKID 65

  Fly    65 EDKIIVLMGKKKVDKSSP-------------------------------EEKVAP---------- 88
            |...:|:|..|....|:|                               ||:..|          
Zfish    66 EKNFVVVMVTKPKSASAPAPPSSSSSSSSSTTASASAAPSAAPVSESPSEEEKKPSEEKPSSDPA 130

  Fly    89 --TPPLAAG--PNVLRTEDVVPSLAPNDQW---VSDLMSMGYGEEEVRSALRASFNHPERAIEYL 146
              |.|:::|  ||....|:...:|.....:   |:::|.|||..:.|.:|||||||:|:||:|||
Zfish   131 PATTPVSSGSLPNANIFEEATSALVTGQSYENMVTEIMLMGYERDRVVAALRASFNNPDRAVEYL 195

  Fly   147 INGIPQE----------VVSEQG----LAAIPSVQT------------------SDQLQQLMADL 179
            :.|||.|          .||..|    .|..|::.|                  ::.|:.|....
Zfish   196 LTGIPAEGEGSVVGAVDAVSPSGSTPASAPAPAISTGLSSPSSTAPAQPSSASGANPLEFLRNQP 260

  Fly   180 NITRMREMINQNPELIHRLMNRLAETDPATFEVFQRNQEELMNMIS---------GGASRTP--- 232
            ...:||::|.|||.|:..|:.::...:|...:....:||:.:.|::         |||....   
Zfish   261 QFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAG 325

  Fly   233 -NEIEHLQITLTAEETAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEED 288
             ..:.::|:  |.:|..|:.||:||||...:.:|||.||:|:|.|||..|::|:.:|
Zfish   326 GGHMNYIQV--TPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDD 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10694NP_651212.1 rad23 1..284 CDD:273167 104/376 (28%)
UBQ 1..76 CDD:294102 24/75 (32%)
UBA1_Rad23_like 110..148 CDD:270466 19/40 (48%)
XPC-binding 172..227 CDD:286376 14/63 (22%)
UBA2_Rad23_like 245..282 CDD:270467 18/36 (50%)
rad23bNP_956858.2 rad23 1..379 CDD:273167 105/379 (28%)
RAD23_N 1..78 CDD:176400 25/76 (33%)
UBA1_Rad23 159..198 CDD:270560 19/38 (50%)
XPC-binding 253..308 CDD:286376 14/54 (26%)
UBA2_HR23B 337..381 CDD:270611 21/44 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595777
Domainoid 1 1.000 49 1.000 Domainoid score I11828
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53856
OrthoDB 1 1.010 - - D1260050at2759
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101279
Panther 1 1.100 - - O PTHR10621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1097
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.890

Return to query results.
Submit another query.