DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10694 and F52C6.3

DIOPT Version :9

Sequence 1:NP_651212.1 Gene:CG10694 / 42855 FlyBaseID:FBgn0039147 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_494127.2 Gene:F52C6.3 / 186085 WormBaseID:WBGene00018660 Length:197 Species:Caenorhabditis elegans


Alignment Length:119 Identity:22/119 - (18%)
Similarity:48/119 - (40%) Gaps:12/119 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 IPQEVVSEQGLAAIPSVQ--TSDQLQQLMADLNITRMREMINQNPELIHRLMNRLAETDPATFEV 212
            :..||..:||:....|..  |.:|:.::...:...:::| ..|.|         |.|::..|.:.
 Worm    21 VKTEVRDKQGVVFTVSYDKGTGNQIIEMEDTVQDVKIQE-AQQAP---------LRESEEVTEDP 75

  Fly   213 FQRNQEELMNMISGGASRTPNEIEHLQITLTAEETAAVGRLEALGFERVMAVQA 266
            ......|::..::...:.|..|:.|..|.:..|.......|:....:.:.:|:|
 Worm    76 ISVESSEVIGNLNVKVAETQQELHHEGIRIYVENAGRTCTLDTSASDTMASVKA 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10694NP_651212.1 rad23 1..284 CDD:273167 22/119 (18%)
UBQ 1..76 CDD:294102
UBA1_Rad23_like 110..148 CDD:270466
XPC-binding 172..227 CDD:286376 7/54 (13%)
UBA2_Rad23_like 245..282 CDD:270467 4/22 (18%)
F52C6.3NP_494127.2 Ubiquitin_like_fold 103..173 CDD:391949 5/27 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.