Protein Alignment Syx1A and VAM3

DIOPT Version :10

• Sequence 1: NP_001189276.1
• Gene: Syx1A / 42854
• FlyBaseID: FBgn0013343
• Length: 296
• Species: Drosophila melanogaster
• Sequence 2: NP_568671.1
• Gene: VAM3 / 834730
• AraportID: AT5G46860
• Length: 268
• Species: Arabidopsis thaliana
• Alignment Length: 286
• Identity: 62/286 - (21%)
• Similarity: 116/286 - (40%)
• Gaps: 59/286 - (20%)

  Fly    37 FAQVEEIRGMIDKV-----QDNVEEVKKKHSAILSAPQTDEK------TKQELEDLMADIKKNAN 90
            |..:|..||...:.     ||:.:.|......|.:...|.::      |.::..:|...:.|...
plant     3 FQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRL 67

  Fly    91 RVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQ 155
            .:...:|.....:::..:.:..|.....:|...:.|:|.|..|:.|:.:.|....||
plant    68 HIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAER-------- 124

  Fly   156 LEITGRP----------TNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLAD---------IEAR 201
             |.|..|          ....|::|:.|:       :..:.|:::.:..|.|         ||.|
plant   125 -ETTYTPFVPQSALPSSYTAGEVDKVPEQ-------RAQLQESKRQELVLLDNEIAFNEAVIEER 181

  Fly   202 HQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266
            .|.|.::...|.|::::|.|:|:||..||.|||.|..|::::    :.||...|..|...:|.::
plant   182 EQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNS----RAATSQGKSQLVQAAKTQK 242

  Fly   267 KK---------IMILICLTVLGILAA 283
            ..         |..::.|.|:.:|||
plant   243 SNSSLTCLLLVIFGIVLLIVIIVLAA 268

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syx1A	NP_001189276.1	Syntaxin	35..230	CDD:459942	44/222 (20%)
		SNARE	231..281	CDD:461727	13/58 (22%)
VAM3	NP_568671.1	Syntaxin_2	28..128	CDD:464199	18/108 (17%)
		SNARE_Qa	178..236	CDD:277193	23/61 (38%)